PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035391001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 378aa    MW: 40818.8 Da    PI: 10.0377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035391001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-055375123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       + C++C+k F r  nL+ H r H
  GSVIVT01035391001 53 FICEICNKGFQRDQNLQLHRRGH 75
                       89*******************88 PP
2zf-C2H2130.00031129151123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k++  +s+ k H + +
  GSVIVT01035391001 129 WKCEKCSKRYAVQSDWKAHSKIC 151
                        58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.4E-65275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-75275No hitNo description
PROSITE profilePS5015710.8455375IPR007087Zinc finger, C2H2
PfamPF121714.2E-55375IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0225375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM003558294124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-5117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-7124149No hitNo description
SMARTSM00355130129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSNLTSASGE ASASSANQAP AAAKKKRSLP GNPDPNAEVV ALSPKTLQAT NRFICEICNK  60
GFQRDQNLQL HRRGHNLPWK LKQRTNKEVR KKVYVCPEPT CVHHDPSRAL GDLTGIKKHF  120
SRKHGEKKWK CEKCSKRYAV QSDWKAHSKI CGTREYRCDC GTLFSRRDSF ITHRAFCDAL  180
AEESARAITG NPLLSSQPGS SSSHLNLQPQ LHSHGPPSID LSSSLFSATS PHMSATALLQ  240
QAAQMGVTMS KPSPSPPMLR PHQAHMSAAN AGFSSTAVAT STAGSDLGLS SRDEMASGFI  300
HGLASFGSKA AVTSAMTKSH FSRSDHEGGG GNDGLTRDFL GLRAFSHRDF LNIPGLDQMN  360
SASPYEQQNQ NQTPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-36125186364Zinc finger protein JACKDAW
5b3h_F9e-36125186364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17991KLKQRTNKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.188240.0fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4382620.0AM438262.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X063445.19, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648346.10.0PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F51e-119IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A438K8T10.0A0A438K8T1_VITVI; Protein indeterminate-domain 7
STRINGVIT_04s0008g01160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-110indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]