PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035363001 | ||||||||
Common Name | LOC100242268, VIT_04s0008g00900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 23192.2 Da PI: 10.701 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.1 | 2e-13 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG g+W+ I+r + ++Rt+ q+ s+ qky GSVIVT01035363001 107 PWTEEEHRTFLLGLEKLGRGDWRGISRNFVTTRTPTQVASHAQKY 151 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.532 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 3.7E-4 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.555 | 100 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.64E-18 | 101 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.8E-19 | 103 | 155 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 104 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 104 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.01E-10 | 107 | 152 | No hit | No description |
Pfam | PF00249 | 4.3E-11 | 107 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006338 | Biological Process | chromatin remodeling | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0035066 | Biological Process | positive regulation of histone acetylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0004402 | Molecular Function | histone acetyltransferase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGRKCSHCGN IGHNSRTCTT LRGSSGVSSS SLTGGVKLFG VQLEMPSTTP LPMKKSFSLD 60 CLPSSSSTPS SSTSSRVSAD ENSDKFSRGY LSDGLIARTQ ERKKGVPWTE EEHRTFLLGL 120 EKLGRGDWRG ISRNFVTTRT PTQVASHAQK YFLRQSSLNK KKRRPSLFDL VESSKFSFHL 180 VNPSIPQPNQ PSIPCGFSLK TTNSTLLDLN F* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 163 | KKKRR |
2 | 159 | 164 | KKKRRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.23289 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ382837 | 0.0 | FQ382837.1 Vitis vinifera clone SS0ABG41YI21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277676.1 | 1e-153 | PREDICTED: transcription factor MYB1R1 | ||||
Swissprot | Q7XC57 | 2e-51 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | D7STN2 | 1e-151 | D7STN2_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0008g00900.t01 | 1e-152 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 2e-56 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035363001 |
Entrez Gene | 100242268 |
Publications ? help Back to Top | |||
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