PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035361001
Common NameVIT_04s0008g00880
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 345aa    MW: 39372.5 Da    PI: 8.4668
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035361001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.9e-092623001854
                        HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  GSVIVT01035361001 262 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 300
                        5887779******************************88 PP
2BELL78.78e-26133202272
               BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        ++e+++kk++Ll ll+ Vd++Y+q+ ++++tvis+F+a+++l++ ++++++Al++iS  +++L+++i++qi
  GSVIVT01035361001 133 KREVEAKKTQLLALLQVVDDQYNQCLDEIHTVISAFHAATELDP-QIHARFALHTISLLYKNLRERISNQI 202
                        7899****************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-2350200IPR006563POX domain
PfamPF075264.4E-2855199IPR006563POX domain
PROSITE profilePS5007111.029241304IPR001356Homeobox domain
CDDcd000865.74E-10244305No hitNo description
SMARTSM003896.9E-6244308IPR001356Homeobox domain
SuperFamilySSF466898.55E-16246313IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-26247310IPR009057Homeodomain-like
PfamPF059204.7E-15261300IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MCGATAPNQC SERSCSGVTH PCLNEVGLGS EQGSCNSKEL SLSFGSYRPA QFSQVISGSR  60
YLHVIQEILA EILNYSLENL DHSIYSTTRT GGQANVQLSS GYAAQRGLSV MGSDEFPDED  120
GRYAVPMDPV LQKREVEAKK TQLLALLQVV DDQYNQCLDE IHTVISAFHA ATELDPQIHA  180
RFALHTISLL YKNLRERISN QILAMGTRFT NGCTSEKERP PFESSFIQKQ WDLQQLRRKD  240
HQLWRPQRGL PERSVSVLRA WMFQNFLHPY PKDAEKHLLA VKSGLTRSQV SNWFINARVR  300
LWKPMIEEMY SEMNRRKGRR NDEESNNSNR RSTISMDNQR YKII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-15250308563Homeobox protein Meis2
3k2a_B8e-15250308563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.295230.0inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4398350.0AM439835.2 Vitis vinifera contig VV78X224475.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648330.10.0PREDICTED: homeobox protein ATH1
RefseqXP_010648331.10.0PREDICTED: homeobox protein ATH1
RefseqXP_010648332.10.0PREDICTED: homeobox protein ATH1
SwissprotP487311e-108ATH1_ARATH; Homeobox protein ATH1
TrEMBLF6H3950.0F6H395_VITVI; Uncharacterized protein
STRINGVIT_04s0008g00880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-102homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]