PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035332001 | ||||||||
Common Name | LOC100266257, VIT_04s0008g00620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28414.8 Da PI: 8.2106 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.6e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l ++v+ +G g +W + +r+ g++R++k+c++rw++yl GSVIVT01035332001 14 RGPWSPEEDATLRNYVQTHGIGgNWIALPRKAGLRRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 44.2 | 4.3e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd+ + +q+G++ W+ Ia+ ++ gRt++++k++w++ GSVIVT01035332001 69 GGFTEEEDKVICAIYNQMGSR-WSVIASQLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.461 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.25E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.496 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.01E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDATLRNYVQ THGIGGNWIA LPRKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDKVIC AIYNQMGSRW SVIASQLPGR TDNDVKNYWN TKLKKKLAKF 120 HSNGNAANNP NPFSSAPPPT AAPMPVTEAY RHGFPPLLTQ GYTGTSNNMG VSEFGASSNN 180 GHNVFISDQG GLSTDHATGI SYVSYLPGTR GGEDDGVLMD FGMGNLPYDI ISGFWFQEKD 240 STEVTPGHDQ SRFLLIDGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468046 | 0.0 | AM468046.2 Vitis vinifera contig VV78X022861.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278546.1 | 0.0 | PREDICTED: transcription factor RAX1 | ||||
TrEMBL | F6H382 | 0.0 | F6H382_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0008g00620.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 3e-71 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035332001 |
Entrez Gene | 100266257 |