PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01035214001

Common Name

LOC100258199, VIT_04s0079g00280

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 635aa MW: 72544.7 Da PI: 5.2116

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01035214001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.3	1.2e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd+ GSVIVT01035214001 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDR 96 79**************************.99***********6434555777****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v s ++++vg+kktLv+y+grap+g +tdWvmheyrl GSVIVT01035214001 97 KVNS-QRRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 .8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.871	6	156	IPR003441	NAC domain
Pfam	PF02365	5.1E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECEI VSGLQDAYAL CRVFKKTASG PKIGEHYATT TTNQMSSDHS 180 SSMELYSEGR CEDLESSDYP ISLDTCSPSL MNGPSADINA TRDGKWMQFL SDEAFYFPTP 240 SLPNYGTMSY PPSKVDVALE CARLQHRFSL PPLEVEDFPQ ELINQSSVPN LWDENYAADD 300 DFTFMTGKET YYNQFNNMNS LRLIDKSWEH QNTSSIEIGH LDEDFKTSER MVENLRWVGM 360 SNKDLNENFI EEHKIVPIEH ISSFQSKLEH EAQGQTDSRE NLKELNDSEL NDFPLGFIND 420 DPNENFIEDG NEDDFSNTQS FEVFEKIEVN HGMFVSTRQV AETFFHQIEP SQTVKVHLNP 480 VITNNLSIEN SGTQIRSKSG SSFFRKFKAF GRGKFIGITK SIEPCRNIAN TITGIVAFLL 540 TCCVYLGENP EGEKLMDYFP ETREMVKQGE EGCSFSIRTV KIAGKTECID EKENVWFIKI 600 RGSFIFSALL KKMGPLLTIA LALCSIWAHH ILPS*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEI VSGLQDAYAL CRVFKKTASG PKIGEHYATT TTNQMSSDHS  180
SSMELYSEGR CEDLESSDYP ISLDTCSPSL MNGPSADINA TRDGKWMQFL SDEAFYFPTP  240
SLPNYGTMSY PPSKVDVALE CARLQHRFSL PPLEVEDFPQ ELINQSSVPN LWDENYAADD  300
DFTFMTGKET YYNQFNNMNS LRLIDKSWEH QNTSSIEIGH LDEDFKTSER MVENLRWVGM  360
SNKDLNENFI EEHKIVPIEH ISSFQSKLEH EAQGQTDSRE NLKELNDSEL NDFPLGFIND  420
DPNENFIEDG NEDDFSNTQS FEVFEKIEVN HGMFVSTRQV AETFFHQIEP SQTVKVHLNP  480
VITNNLSIEN SGTQIRSKSG SSFFRKFKAF GRGKFIGITK SIEPCRNIAN TITGIVAFLL  540
TCCVYLGENP EGEKLMDYFP ETREMVKQGE EGCSFSIRTV KIAGKTECID EKENVWFIKI  600
RGSFIFSALL KKMGPLLTIA LALCSIWAHH ILPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	1	162	15	174	NAC domain-containing protein 19
3swm_B	1e-55	1	162	15	174	NAC domain-containing protein 19
3swm_C	1e-55	1	162	15	174	NAC domain-containing protein 19
3swm_D	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_A	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_B	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_C	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_D	1e-55	1	162	15	174	NAC domain-containing protein 19
3ulx_A	1e-55	2	156	11	168	Stress-induced transcription factor NAC1
4dul_A	1e-55	1	162	12	171	NAC domain-containing protein 19
4dul_B	1e-55	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM441510	0.0	AM441510.2 Vitis vinifera contig VV79X003170.3, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002267333.1	0.0	PREDICTED: NAC domain-containing protein 86
TrEMBL	F6HFV8	0.0	F6HFV8_VITVI; Uncharacterized protein
STRING	VIT_04s0079g00280.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8717	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-170	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	GSVIVT01035214001
Entrez Gene	100258199