PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01035204001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 487aa MW: 54607 Da PI: 8.2466 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.3 | 1.2e-22 | 128 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+ ++++r++lt+GW+ Fv+a++L +gD+v+F GSVIVT01035204001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFrGRQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 216 99*****************************8544444..48****************97788889*************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ GSVIVT01035204001 217 -WNEKNQLLLGIRRA 230 .8899999****997 PP | |||||||
2 | Auxin_resp | 120.8 | 1e-39 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k GSVIVT01035204001 255 AAHAAATNSCFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338 79********************************87599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-49 | 111 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-41 | 121 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-20 | 127 | 229 | No hit | No description |
SMART | SM01019 | 1.1E-22 | 128 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.266 | 128 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-34 | 255 | 338 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 487 aa Download sequence Send to blast |
MKLSTSGLGQ QQGHEGEKKC LNSELWHACA GPLVSLPTVG SRVVYFPQGH SEQVAATTNK 60 EVDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPVELGIP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF 180 RHIFRGRQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA TRPQTVMPSS 240 VLSSDSMHIG LLAAAAHAAA TNSCFTIFYN PRASPSEFVI PLSKYVKAVF HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP 360 LTTFPMYPSL FPLRLKRPWH PGASSLHDSR DEAANGLMWL RGETGDQGLQ SLNFQTVGMF 420 PWTQQRLDPT FLGNDHNQQY QAMLAAGLQN LGSGDPLKQQ YMQFQQPFQY LQQTGSNNPL 480 IISDSK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 18 | 359 | 48 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.12020 | 0.0 | flower| fruit |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002266678.2 | 0.0 | PREDICTED: auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A1L6K4B0 | 0.0 | A0A1L6K4B0_POPTO; Auxin response factor | ||||
STRING | XP_007141982.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP856 | 14 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01035204001 |