PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035177001
Common NameLOC100244550, VIT_11s0078g00480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 331aa    MW: 36637.4 Da    PI: 7.2842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035177001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.5e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lv+++++ G g+W++ ++  g++R++k+c++rw +yl
  GSVIVT01035177001 14 KGPWTPEEDQKLVKYIQKQGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                       79********************************************97 PP

2Myb_DNA-binding47.44.5e-1567111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+++ eE+e +++++  lG++ W++Ia++++ gRt++++k++ +++
  GSVIVT01035177001  67 RGKFSREEEETILNLHSILGNK-WSAIASHLP-GRTDNEIKNFRNTH 111
                        89********************.*********.*********98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129423.635965IPR017930Myb domain
SuperFamilySSF466891.2E-3011106IPR009057Homeodomain-like
SMARTSM007177.3E-151363IPR001005SANT/Myb domain
PfamPF002495.6E-171461IPR001005SANT/Myb domain
CDDcd001671.28E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129418.56766116IPR017930Myb domain
SMARTSM007179.2E-1466114IPR001005SANT/Myb domain
PfamPF002492.6E-1367111IPR001005SANT/Myb domain
CDDcd001675.96E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTPE EDQKLVKYIQ KQGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SREEEETILN LHSILGNKWS AIASHLPGRT DNEIKNFRNT HLKKKLIQMG  120
FDPMTHRPRT DMFASLPHLI ALVNLKELME HQSWEEHAVR LQAEAAQMAR LQYLQYLLQS  180
PASVASASNS ISGITDMEAF NLLSSLSSIK DTQVLNSSQL ETPTPSSFGA GLYSMPFSRL  240
PSLETPSTFE TPSSKDMAQS SNFTVFSQGE TLLNSPWLPS ASSSSHAAPP ATETSITNPA  300
DASSSPIYEG APLFWPDGVF IEDPIFREIA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-27121162105C-Myb DNA-Binding Domain
1msf_C1e-27121162105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4309330.0AM430933.2 Vitis vinifera contig VV78X227166.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265296.10.0PREDICTED: myb-related protein Myb4
SwissprotQ9S9Z21e-107MYB93_ARATH; Transcription factor MYB93
TrEMBLD7UD590.0D7UD59_VITVI; Uncharacterized protein
STRINGVIT_11s0078g00480.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-108myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]