PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035177001 | ||||||||
Common Name | LOC100244550, VIT_11s0078g00480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 36637.4 Da PI: 7.2842 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+++++ G g+W++ ++ g++R++k+c++rw +yl GSVIVT01035177001 14 KGPWTPEEDQKLVKYIQKQGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.5e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+e +++++ lG++ W++Ia++++ gRt++++k++ +++ GSVIVT01035177001 67 RGKFSREEEETILNLHSILGNK-WSAIASHLP-GRTDNEIKNFRNTH 111 89********************.*********.*********98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.635 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-30 | 11 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.567 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 9.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.96E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGRSPCCDES GLKKGPWTPE EDQKLVKYIQ KQGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SREEEETILN LHSILGNKWS AIASHLPGRT DNEIKNFRNT HLKKKLIQMG 120 FDPMTHRPRT DMFASLPHLI ALVNLKELME HQSWEEHAVR LQAEAAQMAR LQYLQYLLQS 180 PASVASASNS ISGITDMEAF NLLSSLSSIK DTQVLNSSQL ETPTPSSFGA GLYSMPFSRL 240 PSLETPSTFE TPSSKDMAQS SNFTVFSQGE TLLNSPWLPS ASSSSHAAPP ATETSITNPA 300 DASSSPIYEG APLFWPDGVF IEDPIFREIA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-27 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-27 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM430933 | 0.0 | AM430933.2 Vitis vinifera contig VV78X227166.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002265296.1 | 0.0 | PREDICTED: myb-related protein Myb4 | ||||
Swissprot | Q9S9Z2 | 1e-107 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | D7UD59 | 0.0 | D7UD59_VITVI; Uncharacterized protein | ||||
STRING | VIT_11s0078g00480.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-108 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035177001 |
Entrez Gene | 100244550 |
Publications ? help Back to Top | |||
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