PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035098001
Common NameLOC100249982, VIT_05s0077g01860
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 260aa    MW: 28785.4 Da    PI: 7.1981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035098001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-2189138255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  GSVIVT01035098001  89 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 138
                        69*******.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.57889146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3289147IPR001471AP2/ERF domain
PfamPF008479.4E-1589138IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2289146IPR016177DNA-binding domain
SMARTSM003801.3E-3689152IPR001471AP2/ERF domain
CDDcd000181.63E-3290147No hitNo description
PRINTSPR003671.3E-1190101IPR001471AP2/ERF domain
PRINTSPR003671.3E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MCGGAIISGF IAAKRGRKLT KEDLWSELDT ISDLLGLDSA NGGDDFNPSE NRVAPKPKQV  60
SKGTNENTQK AIRVEEKKST TTPRIRKNVY RGIRQRPWGK WAAEIRDPHK GVRVWLGTYN  120
TAEEAARAYD EAAKRIRGDK AKLNFADPSS PHFPPPIPLP PSKRRCVVPD PTAQSSYQPT  180
VPPPPLMTYP APYENEAASE LEFKEQISSL ESLLGLEPEQ AATQLNEITE SDSVDLWMLE  240
DLASTHPHHH RQHVCSAAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2190145359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2190145662ATERF1
3gcc_A2e-2190145662ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.172490.0fruit| inflorescence| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4303230.0AM430323.2 Vitis vinifera contig VV78X222883.24, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272426.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3
TrEMBLD7SYA30.0D7SYA3_VITVI; Uncharacterized protein
STRINGVIT_05s0077g01860.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-39ethylene-responsive element binding protein