PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01035051001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ARR-B

Protein Properties

Length: 534aa MW: 59006.5 Da PI: 5.5933

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01035051001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.8	6e-29	213	266	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl GSVIVT01035051001 213 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266 79*****************.******************************8 PP
2	Response_reg	73.9	6.4e-25	35	143	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl+vdD+p+ +++l+++l+ y ev+ + +e al ll+ ++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + + + + + GSVIVT01035051001 35 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAETALSLLRGNKsgFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKHVVMKGV 124 89*******************.***********888778******************6654.8*************** PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 Ga d+l Kp+ +e+l + GSVIVT01035051001 125 THGACDYLIKPVRIEALKN 143 *************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	2.1E-176	10	512	IPR017053	Response regulator B-type, plant
SuperFamily	SSF52172	4.84E-35	32	156	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	1.6E-41	32	176	No hit	No description
SMART	SM00448	9.8E-30	33	145	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	41.362	34	149	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.8E-22	35	143	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	3.89E-27	36	148	No hit	No description
SuperFamily	SSF46689	2.69E-20	210	270	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.048	210	269	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-30	212	271	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-25	213	266	IPR006447	Myb domain, plants
Pfam	PF00249	7.1E-8	215	265	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0009414	Biological Process	response to water deprivation
GO:0010082	Biological Process	regulation of root meristem growth
GO:0010380	Biological Process	regulation of chlorophyll biosynthetic process
GO:0031537	Biological Process	regulation of anthocyanin metabolic process
GO:0048367	Biological Process	shoot system development
GO:0080022	Biological Process	primary root development
GO:0080036	Biological Process	regulation of cytokinin-activated signaling pathway
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MNLGSGQGSM STASSSGAWK AGDVVPDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT 60 KCNRAETALS LLRGNKSGFD IVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKHVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KRKNEWKDLE QSGSVEDGDR QQKPSEDVDY 180 SSSANEGNWK NSKRRKDEED DAEERDDTST LKKPRVVWSV ELHQQFVAAV NQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQNG LNNSFMGPQE ATFGSISSLN 300 GLDLQTLAVA GQLPAQSLAT LQAAGLGRST GKSGLPMPLV DQRNLFSFEA PKFRYGEGQQ 360 QQQQLSNSSK QMNLLHGIPT TMEPKQLATL RHSAQAQILN ETTEVSSEIK GSRGFVPSYD 420 IFNELHQPKS QDWELQNVGL TFNASQHANS IPGNLGSEHG NTHNISQHLN TLVDSSSRVK 480 TEKILDPCCE ITPFPEHYVQ EDLMSALLKQ QEGIGPVEGE FDFDGYSMDN IPV*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MNLGSGQGSM STASSSGAWK AGDVVPDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT  60
KCNRAETALS LLRGNKSGFD IVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKHVV  120
MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KRKNEWKDLE QSGSVEDGDR QQKPSEDVDY  180
SSSANEGNWK NSKRRKDEED DAEERDDTST LKKPRVVWSV ELHQQFVAAV NQLGIDKAVP  240
KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQNG LNNSFMGPQE ATFGSISSLN  300
GLDLQTLAVA GQLPAQSLAT LQAAGLGRST GKSGLPMPLV DQRNLFSFEA PKFRYGEGQQ  360
QQQQLSNSSK QMNLLHGIPT TMEPKQLATL RHSAQAQILN ETTEVSSEIK GSRGFVPSYD  420
IFNELHQPKS QDWELQNVGL TFNASQHANS IPGNLGSEHG NTHNISQHLN TLVDSSSRVK  480
TEKILDPCCE ITPFPEHYVQ EDLMSALLKQ QEGIGPVEGE FDFDGYSMDN IPV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	6e-22	212	272	4	64	ARR10-B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.8548	0.0	bud\| fruit\| leaf\| pedicel\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed only from 5 days post germination onward, when the fixed meristem cell number is established. {ECO:0000269\|PubMed:17363254}.
Uniprot	TISSUE SPECIFICITY: Detected in the whole plant. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269\|PubMed:15173562, ECO:0000269\|PubMed:17363254, ECO:0000269\|PubMed:9891419}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:11691951, ECO:0000269\|PubMed:17363254, ECO:0000269\|PubMed:19039136}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000269\|PubMed:20605455}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM441575	0.0	AM441575.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X044576.17, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275142.2	0.0	PREDICTED: two-component response regulator ARR1 isoform X1
Refseq	XP_010649546.1	0.0	PREDICTED: two-component response regulator ARR1 isoform X2
Swissprot	Q940D0	0.0	ARR1_ARATH; Two-component response regulator ARR1
TrEMBL	A0A151ST50	0.0	A0A151ST50_CAJCA; Two-component response regulator
STRING	VIT_05s0077g01480.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP292	17	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	1e-179	response regulator 1

Link Out ? help Back to Top
Phytozome	GSVIVT01035051001

Publications ? help Back to Top
Bürkle L,Meyer S,Dortay H,Lehrach H,Heyl A In vitro recombination cloning of entire cDNA libraries in Arabidopsis thaliana and its application to the yeast two-hybrid system. Funct. Integr. Genomics, 2005. 5(3): p. 175-83 [PMID:15714319] Moubayidin L, et al. Spatial coordination between stem cell activity and cell differentiation in the root meristem. Dev. Cell, 2013. 26(4): p. 405-15 [PMID:23987513] Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Kurepa J,Li Y,Perry SE,Smalle JA Ectopic expression of the phosphomimic mutant version of Arabidopsis response regulator 1 promotes a constitutive cytokinin response phenotype. BMC Plant Biol., 2014. 14: p. 28 [PMID:24423196] Cortleven A, et al. A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors. Plant Physiol., 2014. 164(3): p. 1470-83 [PMID:24424319] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] D'Alessandro S,Golin S,Hardtke CS,Lo Schiavo F,Zottini M The co-chaperone p23 controls root development through the modulation of auxin distribution in the Arabidopsis root meristem. J. Exp. Bot., 2015. 66(16): p. 5113-22 [PMID:26163704] Jiang L, et al. Strigolactones spatially influence lateral root development through the cytokinin signaling network. J. Exp. Bot., 2016. 67(1): p. 379-89 [PMID:26519957] Moubayidin L, et al. A SCARECROW-based regulatory circuit controls Arabidopsis thaliana meristem size from the root endodermis. Planta, 2016. 243(5): p. 1159-68 [PMID:26848984] Muraro D, et al. A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana. J. Theor. Biol., 2016. 404: p. 182-205 [PMID:27157127] Cortleven A, et al. Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes. Plant Physiol., 2016. 172(1): p. 464-78 [PMID:27388681] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Kushwah S,Laxmi A The interaction between glucose and cytokinin signaling in controlling Arabidopsis thaliana seedling root growth and development. Plant Signal Behav, 2017. 12(5): p. e1312241 [PMID:28467152] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Kobayashi K,Iwase A Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal. Plant Signal Behav, 2017. 12(6): p. e1338999 [PMID:28594268] Liu B,De Storme N,Geelen D Cold interferes with male meiotic cytokinesis in Arabidopsis thaliana independently of the AHK2/3-AHP2/3/5 cytokinin signaling module. Cell Biol. Int., 2017. 41(8): p. 879-889 [PMID:28618065] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Yan Z, et al. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiol., 2017. 175(3): p. 1438-1454 [PMID:28931628] Rong XF, et al. Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 756-764 [PMID:29186581] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938] Waldie T,Leyser O Cytokinin Targets Auxin Transport to Promote Shoot Branching. Plant Physiol., 2018. 177(2): p. 803-818 [PMID:29717021]