PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035048001 | ||||||||
Common Name | LOC100253375, VIT_05s0077g01450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 154aa MW: 16668.8 Da PI: 10.3653 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.7e-19 | 36 | 70 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ GSVIVT01035048001 36 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.624 | 30 | 66 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.6E-13 | 30 | 80 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-13 | 32 | 70 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-15 | 34 | 70 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.24E-13 | 35 | 87 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 36 | 61 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.0E-17 | 36 | 70 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MVDLSEKGSE SEDMNNKNPD AVSSAESQVN EPKKTCADCG TTKTPLWRGG PAGPKSLCNA 60 CGIRSRKKRR AFLGLNKGST DDRKAKRSSN HSHNNGGGNG NNKLGDSLKR RLFALGREVL 120 LQRSTVEKQR RKLGEEEQAA VLLMALSYGY VYA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.8350 | 0.0 | fruit| inflorescence| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM441575 | 1e-166 | AM441575.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X044576.17, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010649545.1 | 1e-109 | PREDICTED: GATA transcription factor 16 | ||||
Swissprot | Q9FJ10 | 1e-52 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A438IQP2 | 1e-108 | A0A438IQP2_VITVI; GATA transcription factor 16 | ||||
TrEMBL | D7SY67 | 1e-108 | D7SY67_VITVI; Uncharacterized protein | ||||
STRING | VIT_05s0077g01450.t01 | 1e-109 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 2e-50 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035048001 |
Entrez Gene | 100253375 |
Publications ? help Back to Top | |||
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