PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035041001
Common NameLOC100251652, VIT_05s0077g01360
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 363aa    MW: 39908.9 Da    PI: 7.9757
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.9e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +grWT++Ede+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  GSVIVT01035041001 14 KGRWTEQEDEILRKYIQANGEGCWRSLPKNAGLLRCGKSCRLRWVNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding521.7e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+ T+eE++ +v+++  +G++ W++Ia +++ gRt++++k++w+++l
  GSVIVT01035041001  67 RGNITAEEEDTIVKLHSSWGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                        7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.499961IPR017930Myb domain
SuperFamilySSF466892.81E-2710108IPR009057Homeodomain-like
SMARTSM007173.6E-121363IPR001005SANT/Myb domain
PfamPF002493.5E-141461IPR001005SANT/Myb domain
CDDcd001671.86E-91661No hitNo description
PROSITE profilePS5129425.04862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2465116IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1467112IPR001005SANT/Myb domain
CDDcd001679.75E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGRWTEQ EDEILRKYIQ ANGEGCWRSL PKNAGLLRCG KSCRLRWVNY  60
LRDDLKRGNI TAEEEDTIVK LHSSWGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRIISFT  120
RPSTESIPSS PPMVKTDGSN KQKGKRKSRS RFSTSKKTAP SIVEMPLRKP GIGAVSEVLA  180
KEKGTILSTI TGKVEETGEK MSLESLDSNE GGDRRSQLGV QGSCMESGVS IMDQFEETQS  240
VALSAGEVTT SNVGLYSNEA RKTGVLGPFE EQGSEIMCLD NFLEGGVMDP NGAMTPKEKR  300
QNVTISKEIE SLEMDPEKVR ASEGSESGNW SSNAEIGEWF TPSSMNSGLN FECVVINGGA  360
RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A8e-21141162103MYB3
3zqc_D8e-21141162103MYB3
3zqc_G8e-21141162103MYB3
3zqc_J8e-21141162103MYB3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3839620.0FQ383962.1 Vitis vinifera clone SS0AAG5YE17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271862.10.0PREDICTED: transcription factor MYB12
TrEMBLF6H7440.0F6H744_VITVI; Uncharacterized protein
STRINGVIT_05s0077g01360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-70myb domain protein 111