PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034943001
Common NameVIT_05s0077g00500
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 307aa    MW: 33984.6 Da    PI: 5.1734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034943001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-172269148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd+ lv++++  G g+W++ ar+ g++Rt+k+c++rw++yl
  GSVIVT01034943001 22 RGPWTVEEDLTLVNYIATQGEGRWNSLARCAGLKRTGKSCRLRWLNYL 69
                       89********************************************97 PP
2Myb_DNA-binding51.42.5e-1675118146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSVIVT01034943001  75 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7551769IPR017930Myb domain
SuperFamilySSF466892.4E-3019116IPR009057Homeodomain-like
SMARTSM007173.3E-142171IPR001005SANT/Myb domain
PfamPF002492.0E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-222376IPR009057Homeodomain-like
CDDcd001673.30E-112469No hitNo description
PROSITE profilePS5129423.24670124IPR017930Myb domain
SMARTSM007171.3E-1474122IPR001005SANT/Myb domain
PfamPF002495.1E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2377123IPR009057Homeodomain-like
CDDcd001671.00E-795118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDVNGRGGSS TVLSEEEMDL RRGPWTVEED LTLVNYIATQ GEGRWNSLAR CAGLKRTGKS  60
CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI AQHLPGRTDN EIKNYWRTRV  120
QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAAATS GSSPAAVAAH QFSGSCDIVA  180
GSAAVPQMAA GGADFYGGQV STGYTPENSS TAASSDSFGA QVSPVSDLTE IYNFPVSDNQ  240
NPDFFQTGQV GYTDSLISPS GYFNQGLDFQ SMEPNTQWYE GGDTATADNL WNVEDIWSVQ  300
TQFTNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-24211610120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.55650.0bud| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in flowers. Restricted to anthers in maturing flowers. Strongest expression in the vascular and connective tissue where the anther attaches to the filament. Not detected in pollen. {ECO:0000269|PubMed:19091873}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9051030.0FJ905103.1 Vitis vinifera cultivar Cabernet Sauvignon R2R3 transcription factor MYB108-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267991.10.0R2R3 transcription factor MYB108-like protein 1
SwissprotQ9LDE12e-95MY108_ARATH; Transcription factor MYB108
TrEMBLA0A438CTE70.0A0A438CTE7_VITVI; Transcription factor MYB108
TrEMBLD7SYH20.0D7SYH2_VITVI; Uncharacterized protein
STRINGVIT_05s0077g00500.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.15e-96myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng HQ, et al.
    The cotton MYB108 forms a positive feedback regulation loop with CML11 and participates in the defense response against Verticillium dahliae infection.
    J. Exp. Bot., 2016. 67(6): p. 1935-50
    [PMID:26873979]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]