PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034687001
Common NameLOC100260933, VIT_13s0074g00240
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 472aa    MW: 51172.6 Da    PI: 8.0818
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034687001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37e-1792180186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+++ + +L+ea++e+ ++l+rg+l++ +Weev++ +     +++  +s +qCk+k++nl+kryk + ++++++    +s++ +f+++e
  GSVIVT01034687001  92 EWSDSAISCLLEAYTEKFTQLNRGNLRGRDWEEVAEIVsercDKQKSCKSVEQCKNKIDNLKKRYKVELQRMNSG-GLPVSHWHWFKKIE 180
                        5********************************9988866667888899*****************999999998.566679******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.1E-2090182No hitNo description
Gene3DG3DSA:3.40.1160.101.0E-72224463IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.967231465IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.83E-57231463IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042548.92E-123234463No hitNo description
PfamPF006963.3E-25235444IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MHNDAASTEK VSGAGDSDAD ADSGGAAFYS QAHDVNPFAV VAAAEESDPA KSGASTPNGK  60
RNPYYYKKLK PSGASESGSG EYRVDYRKDR EEWSDSAISC LLEAYTEKFT QLNRGNLRGR  120
DWEEVAEIVS ERCDKQKSCK SVEQCKNKID NLKKRYKVEL QRMNSGGLPV SHWHWFKKIE  180
AIVGNSPSFK TGSDEDRSGG ASSYMLRQSK RYAPSTVTFA NNMKPKTLSN PKWRRVVFKI  240
SGAALAGNCQ NIDPKVAMQI AREVTTACRL GVEVAIVVGG RNFFCGDSWV SATGLDRPTA  300
YQIGMMATVM NSILLQSALE KLGVQTRVQS AFPTPEVAEP YSRQRAIRHL EKGRVVIFGG  360
IGAGTGNPLF TTDTAAALRA SEINADAVLK GTNVNGIYDC HSANDNVVLD HLSFREVASR  420
GISSMDMMAI TYCEENGIPV VIFNLLEPGN ISRALCGDQV GTLMDQAGRI S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-652284644239Uridylate kinase
3ek5_B2e-652284644239Uridylate kinase
3ek5_C2e-652284644239Uridylate kinase
3ek5_D2e-652284644239Uridylate kinase
3ek5_E2e-652284644239Uridylate kinase
3ek5_F2e-652284644239Uridylate kinase
3ek6_A2e-652284644239Uridylate kinase
3ek6_B2e-652284644239Uridylate kinase
3ek6_C2e-652284644239Uridylate kinase
3ek6_D2e-652284644239Uridylate kinase
3ek6_E2e-652284644239Uridylate kinase
3ek6_F2e-652284644239Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4747010.0AM474701.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X058624.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268973.10.0PREDICTED: uncharacterized protein LOC100260933
TrEMBLF6I5U80.0F6I5U8_VITVI; Uncharacterized protein
STRINGVIT_13s0074g00240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein