PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01034259001 | ||||||||
Common Name | VIT_09s0070g00410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | G2-like | ||||||||
Protein Properties | Length: 232aa MW: 25897.5 Da PI: 8.8284 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.2 | 2.9e-31 | 13 | 67 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe F++av++LGG++kAtPk il+lm+v+gL + hvkSHLQkYRl GSVIVT01034259001 13 KQRIRWTPELHELFLDAVSKLGGPDKATPKGILRLMNVEGLNICHVKSHLQKYRL 67 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.867 | 10 | 70 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-29 | 11 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-18 | 11 | 68 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-25 | 13 | 68 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-8 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.3E-18 | 102 | 148 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDNQVPEAAA AQKQRIRWTP ELHELFLDAV SKLGGPDKAT PKGILRLMNV EGLNICHVKS 60 HLQKYRLAKA VQMKQDKKAS SSEERKVATK TDERETPIER AMHVTEALRV QVEVQKTLHE 120 QLKLQKVIQL NLEQNGEYLR RILEDQHKAG VALPSLMGSH SNPQPITLSS SDGASSPKQY 180 DFEVDCFPSL LSKHKASHTT ESEQPRCHKK PRRSSSVEII SIDSPAESVE G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 13 | 69 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 13 | 69 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-24 | 13 | 69 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-24 | 13 | 69 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-24 | 13 | 69 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-24 | 13 | 69 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 13 | 69 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 13 | 69 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 13 | 69 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 13 | 69 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 13 | 69 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 13 | 69 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM453046 | 0.0 | AM453046.2 Vitis vinifera contig VV78X159248.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019077684.1 | 2e-90 | PREDICTED: myb family transcription factor PHL6-like | ||||
TrEMBL | D7U892 | 1e-170 | D7U892_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0070g00410.t01 | 1e-170 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 3e-51 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01034259001 |