PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034190001
Common NameVIT_08s0007g00170
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family E2F/DP
Protein Properties Length: 379aa    MW: 42796.8 Da    PI: 7.2219
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034190001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.52.3e-23147226471
            E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +Lr+++     +++k+e+ +++t++eva+e+++e               d+kn+rRR+YD+lNVL+al++i++ +k+eirwkg
  GSVIVT01034190001 147 GGLRQFSII---VCKKVENkRTTTYSEVADEIIAEfaaahsktavsldefDEKNIRRRVYDALNVLMALDIITR-DKKEIRWKG 226
                        589999988...*****999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013723.3E-28144226IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-37146230IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-18147227IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.8E-20148226IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440744.45E-42232359No hitNo description
SMARTSM011381.4E-47233365IPR014889Transcription factor DP, C-terminal
CDDcd144582.06E-37233334IPR014889Transcription factor DP, C-terminal
PfamPF087815.0E-34234346IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MANGLGLDLD ISFFQKREHQ NWLLFIRKLA LSHFEVSYKL SATYCSSGIL SCWENQSLKF  60
TSPFWRAESS YWNMMSDRHL GDILGGFDHN HTGKQSPFSV SSSYDHTATA SENTPGVNHL  120
ATDHENNSTP LYDSAAKKKR VSRIIGGGLR QFSIIVCKKV ENKRTTTYSE VADEIIAEFA  180
AAHSKTAVSL DEFDEKNIRR RVYDALNVLM ALDIITRDKK EIRWKGLPTA DWKDIEEVKA  240
LRVKLMTRME KKTAYLKDLE DQIVGLQNLM LRNQQLLKSG NVPSEGFPLP FILVQTSPHA  300
TVEIEISEDM QLVHFDFNST PFSLHDDAYI LKLMRCYQLP AESRHVSQSS SVHSTSSSDI  360
ASGTGVFIRV LIIIMLIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-28146229991PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.125970.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4810971e-141AM481097.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X122072.10, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654301.10.0PREDICTED: transcription factor-like protein DPA
SwissprotQ9FNY23e-89DPB_ARATH; Transcription factor-like protein DPB
TrEMBLF6HLD50.0F6HLD5_VITVI; Uncharacterized protein
STRINGVIT_08s0007g00170.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-83Transcription factor DP