PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034155001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 411aa    MW: 45989.6 Da    PI: 5.6939
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034155001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS582e-18230310184
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                        l++lL++cA+av+++d + a++lL+++++++sp gd +qRla++f+ +L+arla+++s++yk l ++  s    ++ l+a++l+
  GSVIVT01034155001 230 LRTLLIQCAQAVAADDRRSANELLKQVRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKGLISKGRS---AADILKAYHLY 310
                        6789**********************************************************99888887...56666666665 PP
2GRAS41.61.9e-13311345108142
               GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppsl 142
                        +++r+HiiDf+i +G+QWp+++q L+sRp+gpp+l
  GSVIVT01034155001 311 KATRLHIIDFGILYGFQWPTFIQRLSSRPGGPPKL 345
                        4589*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.908204410IPR005202Transcription factor GRAS
PfamPF035146.9E-16230310IPR005202Transcription factor GRAS
PfamPF035146.6E-11311345IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MIMDPSRRGF SSSVNGIQLG NRPFSILSDH NLVAGAKFEN SLFDRSFREV RYLKPDPASA  60
NTASDGLSVS PEEDDCDFSD EVLKYINQML MEEDMEDQTY MLQQSLDLQA AEKSFYEVLG  120
KKYPPSGNLA DNCWIQSPSD CNTSQVQASP FSSSNMRKNP QREDIGLEEE RSTKQAAVYT  180
ESTLRSEMFD MVLLCNRNNC KPHSSTPHEA LQNETSSNLQ QQNGQEVVDL RTLLIQCAQA  240
VAADDRRSAN ELLKQVRQHS SPFGDGNQRL AHCFADGLEA RLAGTGSQIY KGLISKGRSA  300
ADILKAYHLY KATRLHIIDF GILYGFQWPT FIQRLSSRPG GPPKLPKKWE TIQLEELQID  360
RDELLVVNCF ERLCSTSLPS LICLRLLYSL VKAGRELRGQ KHTSSGNSET *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-1623635825173Protein SCARECROW
5b3h_A6e-1623635824172Protein SCARECROW
5b3h_D6e-1623635824172Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.127240.0cell culture| flower| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4503510.0AM450351.1 Vitis vinifera, whole genome shotgun sequence, contig VV79X000370.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019077324.11e-134PREDICTED: scarecrow-like protein 9
SwissprotO809337e-65SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A438DE281e-132A0A438DE28_VITVI; Scarecrow-like protein 9
TrEMBLA0A438HSH01e-132A0A438HSH0_VITVI; Scarecrow-like protein 9
TrEMBLF6HLC11e-132F6HLC1_VITVI; Uncharacterized protein
STRINGVIT_08s0007g00510.t011e-133(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.13e-67GRAS family protein