PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034148001
Common NameLOC100254510, VIT_08s0007g00570
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 300aa    MW: 33157.9 Da    PI: 4.9671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034148001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32112168258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ve+s+edp++++itYeg H h
  GSVIVT01034148001 112 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVEKSSEDPDTLIITYEGLHLH 168
                        8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.187106171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-30107168IPR003657WRKY domain
SuperFamilySSF1182901.96E-26109168IPR003657WRKY domain
SMARTSM007741.0E-35111170IPR003657WRKY domain
PfamPF031061.6E-25112168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDELMAAWTE GSEDELVREL LDDESPFLVV PQETVESKLM SSSSEQAISR LVSTAYTGPT  60
IEDIESALSL TTGKCQSEEN SQARTSIHER DLSKIENKYT LKIKSCGNGM ADDGYKWRKY  120
GQKSIKNSPN PRSYYRCTNP RCSAKKQVEK SSEDPDTLII TYEGLHLHFA YPFFLISPPQ  180
NVPSPSKKPK RIGLQEGQDQ VHDAPQIQET QGSPPTADHG SFPTMFTHVQ EEDAAEKMGP  240
QGLLEDMVPL MIRNPANNIT SSTSSSSSYP SPPNSPSSPS CSLGYSPSYF DISKRYSIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-211101681371WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4587880.0AM458788.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X278469.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270859.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A438HSE30.0A0A438HSE3_VITVI; Putative WRKY transcription factor 49
TrEMBLD7THM00.0D7THM0_VITVI; Uncharacterized protein
STRINGVIT_08s0007g00570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-49WRKY DNA-binding protein 49