PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034073001
Common NameLOC100266680, VIT_08s0007g01290
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 562aa    MW: 61964.5 Da    PI: 6.9159
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034073001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093623991954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  GSVIVT01034073001 362 FEHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 399
                        554459******************************88 PP
2BELL113.79.5e-37229298372
               BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e+++kk++L+s+l+eV++rYk+y++q+q+v++sFe vaglg+a+pY+ lAlka+S+hFrcLk+ai++q+
  GSVIVT01034073001 229 GEHRRKKSRLISMLDEVYRRYKHYYQQMQAVVASFESVAGLGNAAPYADLALKAMSKHFRCLKNAITDQL 298
                        6899***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.7E-58165296IPR006563POX domain
PfamPF075263.4E-43170295IPR006563POX domain
PROSITE profilePS5007112.098340403IPR001356Homeobox domain
SMARTSM003897.3E-10343407IPR001356Homeobox domain
CDDcd000866.74E-13343404No hitNo description
SuperFamilySSF466897.27E-17345409IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27346407IPR009057Homeodomain-like
PfamPF059201.4E-18360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MADGFEPYHV PQQSRRDKLR VVAQNHSGCV EAATNLHGCA GLLPLYDPSL LPSDLLTCAS  60
ASAHEFQHHS HPLSGSAEAC KANPGCVVKE EGVNLMGYVD FDQSFNGGEM VVFKPEPLSL  120
THHEYGSAIF SDKVTGGYMV PGIVGGSGST SNDVSRSSVP LGPFTGYASI LKGSRFLKPA  180
QQLLEEFCDV GCGLYAERVS ADSSMMDPPM ESLSGTGIVD DPLSCGDGGE HRRKKSRLIS  240
MLDEVYRRYK HYYQQMQAVV ASFESVAGLG NAAPYADLAL KAMSKHFRCL KNAITDQLQF  300
TNKAHGQISH GKDESPRFGN TDRGLYGQRP MHSSGFLEHQ PVWRPQRGLP ERAVTVLRAW  360
LFEHFLHPYP TDTDKLMLAK QTGLSRNQVS NWFINARVRL WKPMVEEIHT LETRQAQKSS  420
QREERSADRQ SDHLPSANSL VFENPSTSAQ RVQDAPSKRT RNELSEVHVG SEEPMNLSYN  480
NFNVSLTLGL HQNNGIGLSE SFPINAAQRF GLGLDANSEG YVIGGFEAQN RHFGRDVIGG  540
QLLHDFNHDC LFLAFKYLHG R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-16349407563Homeobox protein Meis2
4xrm_B1e-16349407563Homeobox protein Meis2
5bng_A9e-17349407159Homeobox protein Meis2
5bng_B9e-17349407159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.5990.0bud| flower| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4267460.0AM426746.2 Vitis vinifera contig VV78X267462.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654234.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-133BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLF6HL250.0F6HL25_VITVI; Uncharacterized protein
STRINGVIT_08s0007g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-130TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]