PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034001001
Common NameLOC100263069, VIT_08s0007g01920
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 212aa    MW: 24241.1 Da    PI: 9.4654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034001001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-092873346
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       +WT eE +l+ +a +++ ++   +W ++a++++ g+t ++++  + +
  GSVIVT01034001001 28 KWTHEENKLFENALALHDKDtpdRWLKVAAMIP-GKTVEDVIKQYKD 73
                       8********************************.*******999876 PP
2Myb_DNA-binding482.8e-15135179347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  GSVIVT01034001001 135 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5792477IPR017884SANT domain
SMARTSM007177.6E-102577IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-42573IPR009057Homeodomain-like
SuperFamilySSF466896.94E-122781IPR009057Homeodomain-like
PfamPF002491.6E-82874IPR001005SANT/Myb domain
CDDcd001671.98E-72874No hitNo description
PROSITE profilePS5129420.486128184IPR017930Myb domain
SuperFamilySSF466897.4E-18129183IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-18131183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.7E-13132179IPR009057Homeodomain-like
SMARTSM007172.1E-13132182IPR001005SANT/Myb domain
PfamPF002491.1E-12135179IPR001005SANT/Myb domain
CDDcd001678.12E-11135180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MYRGIEFLSP ASYLQNSNWL FSESNGTKWT HEENKLFENA LALHDKDTPD RWLKVAAMIP  60
GKTVEDVIKQ YKDLEDDISD IEAGLIPIPG YSTSSFKLEW NNNQGFDGLK QFYFPGGKRG  120
SATRSTDQER KKGVPWTEEE HRQFLMGLKK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF  180
IRQLSVGKDK RRSSIHDITT VNLTDSNQTN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-182294476RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.154680.0flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4693530.0AM469353.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X181814.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278729.11e-153PREDICTED: transcription factor DIVARICATA
RefseqXP_010654186.11e-153PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-99DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLF6HKU01e-152F6HKU0_VITVI; Uncharacterized protein
STRINGVIT_08s0007g01920.t011e-152(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-117MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]