PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033800001
Common NameVIT_08s0007g03760
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRF
Protein Properties Length: 392aa    MW: 42467.5 Da    PI: 8.8582
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033800001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.66.9e-26120163144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e
  GSVIVT01033800001 120 DPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVE 163
                        79***************************************987 PP

2QLQ48.23.3e-174884137
                QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       s+F+ aQ+q+L+ Q+l++++++a++ vPpeLlq i+k
  GSVIVT01033800001 48 SYFSLAQWQELELQALIFRHMLAGAAVPPELLQLIKK 84
                       79********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.0E-104884IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.8E-124982IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.4074984IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.455120164IPR014977WRC domain
PfamPF088795.7E-22121163IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MPRLLLDQQP SGSALPLFVP EPNSKISNLS AFPDSTTTAT RFSKTGGSYF SLAQWQELEL  60
QALIFRHMLA GAAVPPELLQ LIKKSLLNHP PYYLQHPLQH YQHYQPALLQ SGYWGRAAMD  120
PEPGRCRRTD GKKWRCSRDV VTGQKYCERH MHRGRNRSRK PVEIPTPAAA GGGGGAAVAS  180
VGALKSTTAA IAAQPLTTVA GGTHFALSGP PPSIDLLHLN RSPPEPKTEN KGLFEHRTEN  240
VSGDGRSDGR VLRHFFDDWP RSIQEPDNAA NGSNNSQATS STYLSMSILG HHSSDVSLKL  300
STGNGDEQSP QDVNAERERP QLNWAAGWGT HQSAQMGGPL AEALRSATSN SSPTSVLHQL  360
PRGTASDTSY EGDCVPMGKE LNRMQNLLTI F*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4779840.0AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277233.30.0PREDICTED: growth-regulating factor 3
SwissprotQ8L8A71e-81GRF4_ARATH; Growth-regulating factor 4
TrEMBLF6HKI60.0F6HKI6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g03760.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9959611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-64growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]