PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033800001 | ||||||||
Common Name | VIT_08s0007g03760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GRF | ||||||||
Protein Properties | Length: 392aa MW: 42467.5 Da PI: 8.8582 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.6 | 6.9e-26 | 120 | 163 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e GSVIVT01033800001 120 DPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVE 163 79***************************************987 PP | |||||||
2 | QLQ | 48.2 | 3.3e-17 | 48 | 84 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l++++++a++ vPpeLlq i+k GSVIVT01033800001 48 SYFSLAQWQELELQALIFRHMLAGAAVPPELLQLIKK 84 79********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.0E-10 | 48 | 84 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.8E-12 | 49 | 82 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.407 | 49 | 84 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.455 | 120 | 164 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.7E-22 | 121 | 163 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MPRLLLDQQP SGSALPLFVP EPNSKISNLS AFPDSTTTAT RFSKTGGSYF SLAQWQELEL 60 QALIFRHMLA GAAVPPELLQ LIKKSLLNHP PYYLQHPLQH YQHYQPALLQ SGYWGRAAMD 120 PEPGRCRRTD GKKWRCSRDV VTGQKYCERH MHRGRNRSRK PVEIPTPAAA GGGGGAAVAS 180 VGALKSTTAA IAAQPLTTVA GGTHFALSGP PPSIDLLHLN RSPPEPKTEN KGLFEHRTEN 240 VSGDGRSDGR VLRHFFDDWP RSIQEPDNAA NGSNNSQATS STYLSMSILG HHSSDVSLKL 300 STGNGDEQSP QDVNAERERP QLNWAAGWGT HQSAQMGGPL AEALRSATSN SSPTSVLHQL 360 PRGTASDTSY EGDCVPMGKE LNRMQNLLTI F* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM477984 | 0.0 | AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277233.3 | 0.0 | PREDICTED: growth-regulating factor 3 | ||||
Swissprot | Q8L8A7 | 1e-81 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | F6HKI6 | 0.0 | F6HKI6_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g03760.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9959 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 3e-64 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033800001 |
Publications ? help Back to Top | |||
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