PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033793001
Common NameVIT_08s0007g03810
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 200aa    MW: 20496.8 Da    PI: 5.198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033793001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-183888155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  GSVIVT01033793001 38 PVYRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAVAYDVAALALKG 88
                       68*****888.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-113888IPR001471AP2/ERF domain
PROSITE profilePS5103222.8793996IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-213998IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-303998IPR001471AP2/ERF domain
SMARTSM003801.8E-3439102IPR001471AP2/ERF domain
PRINTSPR003676.2E-114051IPR001471AP2/ERF domain
CDDcd000184.21E-314098No hitNo description
PRINTSPR003676.2E-117898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025242anatomyinfructescence axis
PO:0007017developmental stagesporophyte senescent stage
PO:0007089developmental stagestem elongation stage
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MHYSKYATNS NSSGSGASGS NASVNGGGAA SSGTGRHPVY RGVRRRSSGK WVSEIREPKK  60
PNRIWLGTFP TPEMAAVAYD VAALALKGQD AELNFPNSAS SLPVPASTSP RDIQVAAASA  120
AAAAGAAVDA LSGGGSTISP IALGRSMANE FVDEDLIFDM PNLLVNMAEG MLLSPPRLDL  180
AGEDATADFT GDHSLWNYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1637981274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4429100.0AM442910.2 Vitis vinifera contig VV78X232607.28, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019077256.11e-142PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-58ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLD7TJ291e-140D7TJ29_VITVI; Uncharacterized protein
STRINGVIT_08s0007g03810.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-47ERF family protein