PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033648001
Common NameLOC100267549, VIT_08s0007g05030
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 343aa    MW: 37660.7 Da    PI: 7.2464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033648001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-171462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  GSVIVT01033648001 14 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding38.33e-1269111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++ +Ed ++  +++  G++ W+ Ia++++ gRt++++k++w++
  GSVIVT01033648001  69 GEFSDDEDRIICSVFASIGSK-WSVIANYLP-GRTDNDIKNYWNT 111
                        789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.788962IPR017930Myb domain
SuperFamilySSF466891.33E-2711109IPR009057Homeodomain-like
SMARTSM007174.3E-131364IPR001005SANT/Myb domain
PfamPF002497.1E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-241569IPR009057Homeodomain-like
CDDcd001674.25E-101662No hitNo description
PROSITE profilePS5129421.10163117IPR017930Myb domain
SMARTSM007173.2E-1167115IPR001005SANT/Myb domain
PfamPF002492.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SVFASIGSKW SVIANYLPGR TDNDIKNYWN TKLKKKLMGM  120
VPVSQRKPHQ ATFSHHLQTY SSLSSPSHAV TTTATSSSYE SNSSNPYYTP AAPTPTSFAR  180
LEPISSIPSS LLNINTGSTA AAAIHPQEGF ASPVHHYQVK DNLLIEASSS SDDGSGSNQI  240
SQGKEPEYDQ YGAVGGRYEQ LGFQNYVYTG LDDQNQRFMI SNSSGGGGGS GSHGWTDQRP  300
NGMLGEPPLD LGLEEFKQLI SANLCNNFSF DENKTEERVV YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3839850.0FQ383985.1 Vitis vinifera clone SS0AAG51YB19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270359.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A438JS320.0A0A438JS32_VITVI; Transcription factor MYB36
TrEMBLD7TIR50.0D7TIR5_VITVI; Uncharacterized protein
STRINGVIT_08s0007g05030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-75myb domain protein 36