PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033515001

Common Name

LOC100265807, VIT_08s0007g06310

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 294aa MW: 32921.8 Da PI: 6.3997

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033515001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.4e-32	118	172	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtp+LHerFve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ GSVIVT01033515001 118 KARIRWTPDLHERFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRI 172 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.848	115	175	IPR017930	Myb domain
SuperFamily	SSF46689	5.73E-17	116	172	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-29	117	173	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-24	118	173	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-9	122	171	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-21	202	249	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MGFSQYDHQA SNPLLYSQSS TSCDSKLDNF SVDSNSTPPA DPNFQFRNTF QSVMRASSEN 60 PNTIQCPSIP FDGNQDIRVC SYLYGSPLAQ QAQCARSSSS GGVSVAPANP VSPILHSKAR 120 IRWTPDLHER FVECVNRLGG AEKATPKAIL KLMDSEGLTI FHVKSHLQKY RIAKYMPESA 180 EGKSEKRAST NDLPHLDNKT GMQFKEALQM QLDVQRRLHE QLEIQRNLQL RIEEQGRQLK 240 MMFEQQQQTN RSFMEADEDL DIMSLEDPST SLDQVENLSA QGSGNTRFPS KIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-26	118	175	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-26	118	175	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-26	118	175	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-26	118	175	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-26	118	175	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-26	118	175	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-26	118	175	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-26	118	175	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM458891	1e-128	AM458891.2 Vitis vinifera contig VV78X102572.14, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002278675.1	0.0	PREDICTED: myb family transcription factor PHL5 isoform X2
Swissprot	Q0WVU3	2e-74	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	F6HLK2	0.0	F6HLK2_VITVI; Uncharacterized protein
STRING	VIT_08s0007g06310.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-76	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01033515001
Entrez Gene	100265807