PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033508001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C3H | ||||||||
Protein Properties | Length: 240aa MW: 24862.3 Da PI: 10.0779 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.3e-07 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H GSVIVT01033508001 36 KSKPCTKFFSTSGCPFGESCHFLH 59 7789******************** PP | |||||||
2 | zf-CCCH | 35.6 | 1.6e-11 | 206 | 230 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + G C +G+rC+FaHg GSVIVT01033508001 206 YKTKLCDNFTK-GSCTFGERCHFAHG 230 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.3 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.709 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-8 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-5 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 5.99E-16 | 106 | 182 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 2.8E-17 | 110 | 179 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.8E-13 | 110 | 180 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 15.074 | 111 | 175 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 8.0E-13 | 113 | 177 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 4.98E-16 | 113 | 175 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-17 | 200 | 236 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-9 | 204 | 235 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 205 | 231 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.145 | 205 | 232 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-9 | 206 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDTRKRGRPG GALNANGGFK KSKQEVESLS TGIGSKSKPC TKFFSTSGCP FGESCHFLHY 60 VPGGYNAVAQ MTNQAPILPP ASRNMAGPPP PVPNGSSMPA VKSPAASFGA SATAKISVDA 120 SLAGAIIGKG GVNSKQICRQ TGAKLSIREH DSDPNLRNIE LEGTFEQIKE ASAMVRELIV 180 NISAMPGHAR TTAMPGGGQA PPASNYKTKL CDNFTKGSCT FGERCHFAHG AGELRKSAI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.15871 | 0.0 | flower| fruit| inflorescence |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM488226 | 0.0 | AM488226.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X207637.2, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279071.1 | 1e-151 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q9FG30 | 1e-102 | C3H52_ARATH; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | F6HLJ6 | 1e-149 | F6HLJ6_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g06400.t01 | 1e-150 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-103 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033508001 |
Publications ? help Back to Top | |||
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