PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033418001 | ||||||||
Common Name | VIT_08s0007g07230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 25569 Da PI: 10.0849 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell+++vk+ G g+W+t +++ g+ R++k+c++rw +yl GSVIVT01033418001 22 RGPWTPEEDELLANYVKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 69 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.6e-15 | 80 | 120 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSVIVT01033418001 80 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 120 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-23 | 13 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.713 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.03E-29 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-11 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 72 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-14 | 80 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.44E-12 | 80 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRNPASASTS KTPCCTKVGL KRGPWTPEED ELLANYVKRE GEGRWRTLPK RAGLLRCGKS 60 CRLRWMNYLR PSVKRGQIAP DEEDLILRLH RLLGNRWSLI AGRIPGRTDN EIKNYWNTHL 120 SKKLISQGID PRTHKPLNPK PNPSPDEPPN LDQYHSPLAA DSNENWQSAD GLQLQQLQQP 180 SNVIAPLPHP AISVQATFSS SPRTVWEPAA LTSTSAPLVH DQKDSMSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 20 | 124 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.17639 | 1e-157 | flower| inflorescence |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY555190 | 0.0 | AY555190.1 Vitis vinifera Myb transcription factor (MybCs1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001268108.1 | 1e-141 | Myb transcription factor | ||||
Swissprot | Q38850 | 3e-81 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | F6HLE7 | 1e-141 | F6HLE7_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g07230.t01 | 1e-142 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-80 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033418001 |
Publications ? help Back to Top | |||
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