PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033416001
Common NameLOC100265914, VIT_08s0007g07250
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 261aa    MW: 28692 Da    PI: 5.4847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033416001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-183180255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  GSVIVT01033416001 31 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 80
                       799******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.5853188IPR001471AP2/ERF domain
CDDcd000187.90E-323187No hitNo description
PfamPF008474.9E-133180IPR001471AP2/ERF domain
SMARTSM003801.3E-363194IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-193188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-283187IPR001471AP2/ERF domain
PRINTSPR003678.5E-83243IPR001471AP2/ERF domain
PRINTSPR003678.5E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEIQFQQPKG AIPATKVRKF KGRNRSNSNN KFVGVRQRPS GRWVAEIKDT TQKIRMWLGT  60
FETAEEAARA YDEAACLLRG SNTRTNFIPN VSSNSPLASR IRTLLDNKKG AKQPKQTSVD  120
SSNISTTIVT PCASSCTSSG SNSLSSEKIQ ETQLFDDAYK PDLSNCSEEV ELGSSESGLS  180
WGFAAGFDRF SFAQQVLDLP KNGGLQEAAE GEFSEFERMK VERQISASLY AMNGVQEYMD  240
TVHDPSDALW DLPPLCSLFC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-152287571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3965860.0FQ396586.1 Vitis vinifera clone SS0AEB9YH10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281619.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
SwissprotA0A1X9PY881e-116ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A438JL410.0A0A438JL41_VITVI; Ethylene-responsive transcription factor RAP2-11
TrEMBLD7TI770.0D7TI77_VITVI; Uncharacterized protein
STRINGVIT_08s0007g07250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-41related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]