PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033396001
Common NameVITISV_009053
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 715aa    MW: 80858.7 Da    PI: 6.8316
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033396001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07253274527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        lCr++a+ G+C +G++C+F Hg+
  GSVIVT01033396001 253 LCRYYAQ-GFCGRGENCPFTHGQ 274
                        8******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.464248275IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4250274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7251273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-6253274IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5253274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030389.226374714IPR033133Pumilio homology domain
SuperFamilySSF483711.23E-103380710IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.101.2E-114385709IPR011989Armadillo-like helical
SMARTSM000250.93395430IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503027.894395430IPR001313Pumilio RNA-binding repeat
CDDcd079203.05E-132398710IPR033712Pumilio, RNA binding domain
PROSITE profilePS5030212.28431466IPR001313Pumilio RNA-binding repeat
SMARTSM000253.3E-9431466IPR001313Pumilio RNA-binding repeat
PfamPF008063.3E-11431465IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.034467506IPR001313Pumilio RNA-binding repeat
SMARTSM000256.1470505IPR001313Pumilio RNA-binding repeat
PfamPF008067.9E-4474503IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503025.677507542IPR001313Pumilio RNA-binding repeat
SMARTSM000251.9507542IPR001313Pumilio RNA-binding repeat
SMARTSM000255.8E-7543578IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.807543578IPR001313Pumilio RNA-binding repeat
PfamPF008061.6E-7545570IPR001313Pumilio RNA-binding repeat
SMARTSM000250.027579614IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.921579614IPR001313Pumilio RNA-binding repeat
PfamPF008062.4E-4581602IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.757615650IPR001313Pumilio RNA-binding repeat
SMARTSM000259.2E-4615650IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.337651688IPR001313Pumilio RNA-binding repeat
SMARTSM000250.0032653688IPR001313Pumilio RNA-binding repeat
PfamPF008065.6E-4656679IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503024.511689714IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDQEESNLPS EQSLSSSLAE LSFKGEEAIK AANSQRLDHT FLLDDQFANL LKDSLPLSPQ  60
SHSILTRTNT EDIPPNRFDQ FNVEMNGKHN VDFLKLDDQV QGEKAVSCQL LAYQTNPSQV  120
LLTVSSPGTK VPDVPCSQSY FSSLQSPVLG MQSQEFTESH IPWLHAEEER YSIMHKKYLH  180
WHDLQNQRSE ARNLIQASEN AANVIRTWNI EKSYVNNPIS YQYENFSEES FQSDGAIPRR  240
FGCSGSNLIS SILCRYYAQG FCGRGENCPF THGQRKKCPI SFANPQPALS PKDFNVVQGF  300
GKMGEQSYPE KILMRKNGLN SVKEINFIRE SELFTNSSSN GRMISNGHFY HNAHIVGTRS  360
SPVDGRKYWP QPLDTKDSRH DNLRLQTRKY NSVDEVTGRI YLMAKDQSGC RFLQRKMTEG  420
NAEDIEKIFL EIVGHVVELM THPFGNYLVQ KLLEVCSEDQ RTQIVFAITA KAGDLLTVSI  480
NMHGTRSVQK VIETIKSPEQ FLMVVASLKP GIVNLIKDLN GYHVAECCLQ HLMPGYIEFL  540
FEAVSAHCVE LATDCHGCRV LQKCLGHSDG EHRLRLLSAI IANALILSQD PFGNYVVQYV  600
FELEGSWART EVLNQLEGYY RYLSMQKYSS NVVEKCLKYA GEERFARIIQ EFMDHPQLDQ  660
MMLDPYANYV IQTALNHSKG ALHAALLEAI RPHIPALRTN PYGKKVLSSC GLKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bx3_A9e-633937078328Protein PUF4
3bx3_B9e-633937078328Protein PUF4
4dzs_A1e-6239370730350Pumilio homology domain family member 4
4dzs_B1e-6239370730350Pumilio homology domain family member 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4844070.0AM484407.2 Vitis vinifera contig VV78X059718.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276886.10.0PREDICTED: uncharacterized protein LOC100250413
RefseqXP_010653844.10.0PREDICTED: uncharacterized protein LOC100250413
RefseqXP_010653845.10.0PREDICTED: uncharacterized protein LOC100250413
SwissprotQ9LVC31e-140PUM12_ARATH; Pumilio homolog 12
TrEMBLA5C6V60.0A5C6V6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g07440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82856
Publications ? help Back to Top
  1. Borhan MH, et al.
    WRR4 encodes a TIR-NB-LRR protein that confers broad-spectrum white rust resistance in Arabidopsis thaliana to four physiological races of Albugo candida.
    Mol. Plant Microbe Interact., 2008. 21(6): p. 757-68
    [PMID:18624640]
  2. Tam PP, et al.
    The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization.
    BMC Plant Biol., 2010. 10: p. 44
    [PMID:20214804]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]