PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033385001 | ||||||||
Common Name | VITISV_041707 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 266aa MW: 29329 Da PI: 8.6653 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.9 | 2.4e-17 | 192 | 226 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l GSVIVT01033385001 192 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 226 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.0E-15 | 186 | 240 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.424 | 186 | 222 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.1E-14 | 186 | 223 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 5.23E-15 | 187 | 250 | No hit | No description |
CDD | cd00202 | 9.04E-12 | 191 | 238 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 192 | 217 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.0E-15 | 192 | 226 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDFYREVSVS GEYPQEQVPS TVCSKLGGLS AGSLDDLFST QNTEVDVSLE WLSIFVEDCL 60 SSTGNCLPAP KNVASDSATP KPSKPLQSMQ KPQQKPSSPL QNLVIPGKAR SKRKRATTIT 120 TSFSNWVHHL NPENQNLHIT SSDPPLLQQA YWLADSELIV PKKEESSSNN NNNNNSMVKE 180 EEEGSNGQPR RCTHCLAQRT PQWRAGPLGP KTLCNACGVR YKSGRLLPEY RPAKSPTFVS 240 YKHSNSHKKV MEMRMAVLSS IPSDQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.9874 | 0.0 | bud| cell culture| flower| fruit| inflorescence| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM470429 | 0.0 | AM470429.1 Vitis vinifera contig VV78X191569.25, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282225.1 | 1e-179 | PREDICTED: GATA transcription factor 2 | ||||
TrEMBL | A0A438JKX7 | 1e-177 | A0A438JKX7_VITVI; GATA transcription factor 9 | ||||
TrEMBL | A5BTD3 | 1e-174 | A5BTD3_VITVI; Uncharacterized protein | ||||
TrEMBL | F6HLA6 | 1e-177 | F6HLA6_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g07550.t01 | 1e-178 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 3e-41 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033385001 |