PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033385001
Common NameVITISV_041707
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 266aa    MW: 29329 Da    PI: 8.6653
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033385001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.4e-17192226135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  GSVIVT01033385001 192 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 226
                        *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.0E-15186240IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.424186222IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.1E-14186223IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15187250No hitNo description
CDDcd002029.04E-12191238No hitNo description
PROSITE patternPS003440192217IPR000679Zinc finger, GATA-type
PfamPF003205.0E-15192226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDFYREVSVS GEYPQEQVPS TVCSKLGGLS AGSLDDLFST QNTEVDVSLE WLSIFVEDCL  60
SSTGNCLPAP KNVASDSATP KPSKPLQSMQ KPQQKPSSPL QNLVIPGKAR SKRKRATTIT  120
TSFSNWVHHL NPENQNLHIT SSDPPLLQQA YWLADSELIV PKKEESSSNN NNNNNSMVKE  180
EEEGSNGQPR RCTHCLAQRT PQWRAGPLGP KTLCNACGVR YKSGRLLPEY RPAKSPTFVS  240
YKHSNSHKKV MEMRMAVLSS IPSDQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.98740.0bud| cell culture| flower| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4704290.0AM470429.1 Vitis vinifera contig VV78X191569.25, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282225.11e-179PREDICTED: GATA transcription factor 2
TrEMBLA0A438JKX71e-177A0A438JKX7_VITVI; GATA transcription factor 9
TrEMBLA5BTD31e-174A5BTD3_VITVI; Uncharacterized protein
TrEMBLF6HLA61e-177F6HLA6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g07550.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-41GATA transcription factor 9