PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033381001

Common Name

VIT_08s0007g07580

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 306aa MW: 33914.4 Da PI: 9.3332

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033381001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	6e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl GSVIVT01033381001 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.014	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.38E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-19	143	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MYHHHHHQGK NIHPSSRTPI TPERNLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANS ATSKTVVGER 120 MPEANGALMS SPNIGNQTNK SLHLSETLQM IEAQRRLHEQ LEVQRHLQLR IEAQGKYLQA 180 VLEKAQETLG RQNLGAVGLE AAKVQLSELV SKVSTQCLHS AFSELKELQK QEIHNCGMGL 240 RPYTNGNGSN SYSEGRFKGR AEADNFMSHG YRLPCFGAKL DLNAHDENDV TLSCKQFDLN 300 GFSWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.2615	0.0	inflorescence\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM427208	1e-111	AM427208.1 Vitis vinifera contig VV78X026806.9, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282324.1	1e-172	PREDICTED: myb-related protein 2
Refseq	XP_010653833.1	1e-172	PREDICTED: myb-related protein 2
Swissprot	Q9SQQ9	1e-110	PHL9_ARATH; Myb-related protein 2
TrEMBL	F6HLA5	0.0	F6HLA5_VITVI; Uncharacterized protein
STRING	VIT_08s0007g07580.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-112	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01033381001

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]