PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033374001
Common NameLOC100263995, VIT_08s0007g07640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 391aa    MW: 44064.2 Da    PI: 8.248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033374001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM184.13.4e-5731301129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdee++++yL+++v ++++++ ++i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+
  GSVIVT01033374001   3 LPPGFRFHPTDEEIISYYLTERVMNSSFSA-RAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEI 93 
                        79**************************99.89***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++ kg lvg+kktLvfy+grapkgek++Wvmheyrle
  GSVIVT01033374001  94 YKGKGCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 130
                        **9********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-642154IPR003441NAC domain
PROSITE profilePS5100560.6293154IPR003441NAC domain
PfamPF023651.7E-294129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDLPPGFRFH PTDEEIISYY LTERVMNSSF SARAIGEVDL NKCEPWDLPK KAKMGEKEWY  60
FFCQRDRKYP TGMRTNRATE SGYWKATGKD KEIYKGKGCL VGMKKTLVFY RGRAPKGEKS  120
NWVMHEYRLE GKFSYYNLPK AAKDEWVVCR VFHKSAGIKR SLIPAPIRMN SFGDDLLDCS  180
SLPPLIDPPY SNPNKNDSCF TNGEDEFKGS STRFSDGNHH YPYFSPTING HQLQKQQDQK  240
SFLLSPNNVH TTSNYQATLS NPTPNSIFYP QVSPSNPLFP FQASPTPSYS HWQMGSSFPS  300
FPGSGFKGSD PTSTVRAQTS GVQRQCKVEQ FSSNQSMVSL SQDTGLSTDM NTEISSVLSK  360
HQDTGNNRSY EDLQGPSVGQ IGDLDYLLDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-52116015171NO APICAL MERISTEM PROTEIN
1ut4_B1e-52116015171NO APICAL MERISTEM PROTEIN
1ut7_A1e-52116015171NO APICAL MERISTEM PROTEIN
1ut7_B1e-52116015171NO APICAL MERISTEM PROTEIN
4dul_A1e-52116015171NAC domain-containing protein 19
4dul_B1e-52116015171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.123080.0bud| fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4304640.0AM430464.2 Vitis vinifera contig VV78X080122.17, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277068.10.0PREDICTED: NAC domain-containing protein 92
RefseqXP_010653830.10.0PREDICTED: NAC domain-containing protein 92
TrEMBLA0A438EGT90.0A0A438EGT9_VITVI; NAC domain-containing protein 100
TrEMBLF6HLA20.0F6HLA2_VITVI; Uncharacterized protein
STRINGVIT_08s0007g07640.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-104Arabidopsis NAC domain containing protein 87