PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033374001 | ||||||||
Common Name | LOC100263995, VIT_08s0007g07640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 391aa MW: 44064.2 Da PI: 8.248 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 184.1 | 3.4e-57 | 3 | 130 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee++++yL+++v ++++++ ++i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+ GSVIVT01033374001 3 LPPGFRFHPTDEEIISYYLTERVMNSSFSA-RAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEI 93 79**************************99.89***************99999*************************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ kg lvg+kktLvfy+grapkgek++Wvmheyrle GSVIVT01033374001 94 YKGKGCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 130 **9********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-64 | 2 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.629 | 3 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-29 | 4 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MDLPPGFRFH PTDEEIISYY LTERVMNSSF SARAIGEVDL NKCEPWDLPK KAKMGEKEWY 60 FFCQRDRKYP TGMRTNRATE SGYWKATGKD KEIYKGKGCL VGMKKTLVFY RGRAPKGEKS 120 NWVMHEYRLE GKFSYYNLPK AAKDEWVVCR VFHKSAGIKR SLIPAPIRMN SFGDDLLDCS 180 SLPPLIDPPY SNPNKNDSCF TNGEDEFKGS STRFSDGNHH YPYFSPTING HQLQKQQDQK 240 SFLLSPNNVH TTSNYQATLS NPTPNSIFYP QVSPSNPLFP FQASPTPSYS HWQMGSSFPS 300 FPGSGFKGSD PTSTVRAQTS GVQRQCKVEQ FSSNQSMVSL SQDTGLSTDM NTEISSVLSK 360 HQDTGNNRSY EDLQGPSVGQ IGDLDYLLDY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 1 | 160 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 1 | 160 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 1 | 160 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 1 | 160 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-52 | 1 | 160 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 1 | 160 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.12308 | 0.0 | bud| fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM430464 | 0.0 | AM430464.2 Vitis vinifera contig VV78X080122.17, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277068.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
Refseq | XP_010653830.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
TrEMBL | A0A438EGT9 | 0.0 | A0A438EGT9_VITVI; NAC domain-containing protein 100 | ||||
TrEMBL | F6HLA2 | 0.0 | F6HLA2_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g07640.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-104 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033374001 |
Entrez Gene | 100263995 |