PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033372001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 662aa    MW: 74009 Da    PI: 7.0075
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033372001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.5e-5281401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+ +yL kkv+++++++ ++i++vdiyk++Pw+Lp k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  GSVIVT01033372001   8 LPPGFRFHPTDEELILHYLSKKVTSTPFPV-SIIADVDIYKFDPWELPGKAVFGEKEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKTI 98 
                        79****************************.89***************7777899************************************* PP

                NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++      ++ ++g+kk Lvfy+gr pkg kt+W+mheyrl
  GSVIVT01033372001  99 VAAssigggGHGHIGVKKALVFYQGRPPKGIKTNWIMHEYRL 140
                        *988888776667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-635173IPR003441NAC domain
PROSITE profilePS5100560.7378173IPR003441NAC domain
PfamPF023656.6E-279140IPR003441NAC domain
SuperFamilySSF503701.29E-14484635IPR000772Ricin B, lectin domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MDNPQSTLPP GFRFHPTDEE LILHYLSKKV TSTPFPVSII ADVDIYKFDP WELPGKAVFG  60
EKEWYFFSPR DRKYPNGLRP NRAAASGYWK ATGTDKTIVA ASSIGGGGHG HIGVKKALVF  120
YQGRPPKGIK TNWIMHEYRL AQPPNPAINK PPLKLRDASM RLDNWVLCRI YKKSNAVPPA  180
TAAAIDDDRE QEDSFMEESL KSHPNQSTIQ PQKPSSFSNI LDAMDSSTLG HLFSDIQYSD  240
PTGFEPTPPA KYGSLGQSND ILPKLPYWKS VPSMENQLKR QRSSMDGDVP CPSKKLTSSC  300
TFTTNPNQPN SDLGTMEFPF GHHHHTHHHR PEYGAGEEEE YLQPPPPPPL IHPPPPPPAY  360
FHGEDEPPPP AYFYGEDEPP PPRAQVHHIS HADPPRPPPS SHVHHISHVE DQGFGRENYT  420
HEGPPYARPP PVSYSASAPV RHVSHHLNPQ QPQGTEQVET HHLHHLPGFL HHHNEAHGVG  480
SNLSNKPTVR VFCKAKPNHS LTILDGKVYL APSNKTDMLQ HWIKDEKYST SVKDEEGFPS  540
FALVNKATGQ AMKHSIGASH PVQLIPYNPD VLDESVLWTE SKDLGDNFRS IRMINNIHLN  600
VDALHGDRSH GSVHDCTTIV LNKWKKGDNQ LWKISLYFEN PFPSQLTQSI PLSLNLSLCE  660
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-69517714169NO APICAL MERISTEM PROTEIN
1ut4_B3e-69517714169NO APICAL MERISTEM PROTEIN
1ut7_A3e-69517714169NO APICAL MERISTEM PROTEIN
1ut7_B3e-69517714169NO APICAL MERISTEM PROTEIN
4dul_A3e-69517714169NAC domain-containing protein 19
4dul_B3e-69517714169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.21680.0bud| flower| fruit| inflorescence| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3955280.0FQ395528.1 Vitis vinifera clone SS0AFA15YH14.
GenBankFQ3962540.0FQ396254.1 Vitis vinifera clone SS0AFA10YM23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLF6HLA10.0F6HLA1_VITVI; Uncharacterized protein
STRINGVIT_08s0007g07660.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-81NAC domain containing protein 47