PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033253001 | ||||||||
Common Name | VIT_08s0007g08790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20696 Da PI: 9.6711 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.5 | 8.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr+g+lKKA+ELSvLCdaev viifsstgklye+ss GSVIVT01033253001 9 KKIENINSRQVTFSKRRAGLLKKAKELSVLCDAEVGVIIFSSTGKLYEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 71.2 | 3.1e-24 | 95 | 179 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++q e+a Lk+e+ +Lq+ +++G++L+ Ls+keLq+Le+ L +++ ++++kK+++lleq++++++ e+++ en++Lrk++ GSVIVT01033253001 95 EQESQPEVASLKEEVAKLQKGYLRMMGKELDGLSFKELQHLEHLLSEGILSVKDKKEQVLLEQLKKSRMHEQRAMMENETLRKQV 179 58899******************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.59 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.20E-42 | 2 | 69 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-32 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.09 | 95 | 181 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.2E-16 | 96 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGRGKIEIKK IENINSRQVT FSKRRAGLLK KAKELSVLCD AEVGVIIFSS TGKLYEFSSS 60 SMEHTLTRYG RGLDSELPSL HRSAEFTIPV VFTFEQESQP EVASLKEEVA KLQKGYLRMM 120 GKELDGLSFK ELQHLEHLLS EGILSVKDKK EQVLLEQLKK SRMHEQRAMM ENETLRKQVN 180 P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-21 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM431485 | 1e-96 | AM431485.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X232794.5, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278584.1 | 1e-114 | PREDICTED: MADS-box transcription factor 23 isoform X1 | ||||
Swissprot | Q39295 | 1e-61 | AGL15_BRANA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | D7THU3 | 1e-127 | D7THU3_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g08790.t01 | 1e-128 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 4e-46 | AGAMOUS-like 15 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033253001 |