PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033195001 | ||||||||
Common Name | VIT_04s0069g00980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 102aa MW: 12097.7 Da PI: 10.1929 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.3 | 3.7e-29 | 17 | 76 | 1 | 59 |
---SS-EEEEEEE--TT-S.S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgse.fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K++k+++ +pr+YYrC+s+gC+vkk+ver+++d ++v++tYeg Hnh+ GSVIVT01033195001 17 MDDGFKWRKYGKKKIKSNPiYPRNYYRCSSRGCQVKKRVERDRDDSSYVITTYEGVHNHP 76 69***************9867**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.1E-32 | 7 | 78 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-27 | 9 | 78 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.39 | 12 | 78 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-32 | 17 | 77 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-24 | 18 | 76 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MGIRVFALRT RSEEDIMDDG FKWRKYGKKK IKSNPIYPRN YYRCSSRGCQ VKKRVERDRD 60 DSSYVITTYE GVHNHPTPRN HITLPINYWA LQQTSSHPPF Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 7 | 78 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-24 | 7 | 78 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452095 | 1e-100 | AM452095.1 Vitis vinifera contig VV78X138277.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003631843.1 | 3e-72 | PREDICTED: probable WRKY transcription factor 43 | ||||
Swissprot | Q93WU9 | 2e-33 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A438DL90 | 3e-70 | A0A438DL90_VITVI; Putative WRKY transcription factor 51 | ||||
TrEMBL | D7T0E8 | 2e-70 | D7T0E8_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0069g00980.t01 | 3e-71 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 9e-36 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033195001 |
Publications ? help Back to Top | |||
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