PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033195001
Common NameVIT_04s0069g00980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 102aa    MW: 12097.7 Da    PI: 10.1929
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033195001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.7e-291776159
                       ---SS-EEEEEEE--TT-S.S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  1 ldDgynWrKYGqKevkgse.fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                       +dDg++WrKYG+K++k+++ +pr+YYrC+s+gC+vkk+ver+++d ++v++tYeg Hnh+
  GSVIVT01033195001 17 MDDGFKWRKYGKKKIKSNPiYPRNYYRCSSRGCQVKKRVERDRDDSSYVITTYEGVHNHP 76
                       69***************9867**************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-32778IPR003657WRKY domain
SuperFamilySSF1182904.84E-27978IPR003657WRKY domain
PROSITE profilePS5081129.391278IPR003657WRKY domain
SMARTSM007744.3E-321777IPR003657WRKY domain
PfamPF031061.8E-241876IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MGIRVFALRT RSEEDIMDDG FKWRKYGKKK IKSNPIYPRN YYRCSSRGCQ VKKRVERDRD  60
DSSYVITTYE GVHNHPTPRN HITLPINYWA LQQTSSHPPF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24778777Probable WRKY transcription factor 4
2lex_A2e-24778777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4520951e-100AM452095.1 Vitis vinifera contig VV78X138277.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631843.13e-72PREDICTED: probable WRKY transcription factor 43
SwissprotQ93WU92e-33WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A438DL903e-70A0A438DL90_VITVI; Putative WRKY transcription factor 51
TrEMBLD7T0E82e-70D7T0E8_VITVI; Uncharacterized protein
STRINGVIT_04s0069g00980.t013e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.19e-36WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]