PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033064001 | ||||||||
Common Name | LOC100241234, VIT_14s0068g01780, VITISV_024281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | SBP | ||||||||
Protein Properties | Length: 379aa MW: 42108.2 Da PI: 8.4996 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.6 | 4.7e-40 | 90 | 166 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dl +++eyhrrh+vCe hsk+pvv++ g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ GSVIVT01033064001 90 CLVDGCTSDLRNCREYHRRHRVCERHSKTPVVIIGGQEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKTQP 166 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.9E-32 | 84 | 151 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.248 | 87 | 164 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-37 | 88 | 169 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-29 | 90 | 163 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEWNLQPSTW DLIELNQEKD PYMPTTVGSG TLLGQKTKEK FSVDLKLGRL GDLGDGSTDK 60 FKDSKSLRVS SPSGSSRRAR ALNGTQNVSC LVDGCTSDLR NCREYHRRHR VCERHSKTPV 120 VIIGGQEKRF CQQCSRFHSL GEFDEVKRSC RKRLDGHNRR RRKTQPESFY LGSGNFLSNH 180 QGTGFLQFGS SQMLTTSTAS SPTWPRIARS EEEAMFYNHC QQLHVGPIPF PNSMYNRGGD 240 KEFPFLQDND PKISHLVVAP EVPNFHPVRV QSKNGRASHE LTRPASSDCA FSLLSLPATQ 300 FSGISLAQLL HTNATPPVQT ISSGPHWFNN LAQDSCSQVI ESMPISPVLV PVDTTKANDH 360 CNTMFHMGSS GLSENEPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-27 | 90 | 163 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM470860 | 0.0 | AM470860.1 Vitis vinifera contig VV78X074716.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660739.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_010660740.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Swissprot | B9DI20 | 1e-53 | SP13A_ARATH; Squamosa promoter-binding-like protein 13A | ||||
Swissprot | P0DI11 | 1e-53 | SP13B_ARATH; Squamosa promoter-binding-like protein 13B | ||||
TrEMBL | A0A438JDE8 | 0.0 | A0A438JDE8_VITVI; Squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A5BTU0 | 0.0 | A5BTU0_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0068g01780.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 9e-49 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033064001 |
Entrez Gene | 100241234 |
Publications ? help Back to Top | |||
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