PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033064001
Common NameLOC100241234, VIT_14s0068g01780, VITISV_024281
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 379aa    MW: 42108.2 Da    PI: 8.4996
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033064001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.64.7e-4090166278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        C v+gC++dl +++eyhrrh+vCe hsk+pvv++ g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  GSVIVT01033064001  90 CLVDGCTSDLRNCREYHRRHRVCERHSKTPVVIIGGQEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKTQP 166
                        **************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-3284151IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.24887164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-3788169IPR004333Transcription factor, SBP-box
PfamPF031101.4E-2990163IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEWNLQPSTW DLIELNQEKD PYMPTTVGSG TLLGQKTKEK FSVDLKLGRL GDLGDGSTDK  60
FKDSKSLRVS SPSGSSRRAR ALNGTQNVSC LVDGCTSDLR NCREYHRRHR VCERHSKTPV  120
VIIGGQEKRF CQQCSRFHSL GEFDEVKRSC RKRLDGHNRR RRKTQPESFY LGSGNFLSNH  180
QGTGFLQFGS SQMLTTSTAS SPTWPRIARS EEEAMFYNHC QQLHVGPIPF PNSMYNRGGD  240
KEFPFLQDND PKISHLVVAP EVPNFHPVRV QSKNGRASHE LTRPASSDCA FSLLSLPATQ  300
FSGISLAQLL HTNATPPVQT ISSGPHWFNN LAQDSCSQVI ESMPISPVLV PVDTTKANDH  360
CNTMFHMGSS GLSENEPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-27901631184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4708600.0AM470860.1 Vitis vinifera contig VV78X074716.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660739.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010660740.10.0PREDICTED: squamosa promoter-binding-like protein 13A
SwissprotB9DI201e-53SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI111e-53SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A438JDE80.0A0A438JDE8_VITVI; Squamosa promoter-binding-like protein 13A
TrEMBLA5BTU00.0A5BTU0_VITVI; Uncharacterized protein
STRINGVIT_14s0068g01780.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-49SBP family protein
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]