PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033063001 | ||||||||
Common Name | LOC100263502, VIT_14s0068g01770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 183aa MW: 20787.3 Da PI: 9.7723 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107 | 9.1e-34 | 104 | 162 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+++v++tYeg H+h+ GSVIVT01033063001 104 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDESIVVTTYEGVHTHP 162 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-35 | 89 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-30 | 96 | 163 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.125 | 99 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-40 | 104 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-27 | 105 | 162 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MENYQNFFAC SSSAPPPASM GFTSNMESSN VFGNVHGHSI PNGFLGLKST EIHVPTGQEV 60 ENISRSSGGF GRSENEVKSC KKKYEKKIRK PRYAFQTRSQ VDILDDGYRW RKYGQKAVKN 120 NKFPRSYYRC THQGCNVKKQ VQRLSKDESI VVTTYEGVHT HPIEKPTDNF EHILNQMQIY 180 AP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-27 | 94 | 163 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 1e-27 | 94 | 163 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ728450 | 0.0 | JQ728450.1 Vitis amurensis WRKY45 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274387.1 | 1e-136 | PREDICTED: probable WRKY transcription factor 75 | ||||
TrEMBL | D7SVN0 | 1e-135 | D7SVN0_VITVI; Uncharacterized protein | ||||
TrEMBL | I3RQB5 | 1e-135 | I3RQB5_9ROSI; WRKY45 | ||||
STRING | VIT_14s0068g01770.t01 | 1e-135 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 3e-57 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033063001 |
Entrez Gene | 100263502 |