PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033063001
Common NameLOC100263502, VIT_14s0068g01770
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 183aa    MW: 20787.3 Da    PI: 9.7723
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033063001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.1e-34104162159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+++v++tYeg H+h+
  GSVIVT01033063001 104 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDESIVVTTYEGVHTHP 162
                        59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-3589162IPR003657WRKY domain
SuperFamilySSF1182902.09E-3096163IPR003657WRKY domain
PROSITE profilePS5081130.12599164IPR003657WRKY domain
SMARTSM007741.3E-40104163IPR003657WRKY domain
PfamPF031061.0E-27105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MENYQNFFAC SSSAPPPASM GFTSNMESSN VFGNVHGHSI PNGFLGLKST EIHVPTGQEV  60
ENISRSSGGF GRSENEVKSC KKKYEKKIRK PRYAFQTRSQ VDILDDGYRW RKYGQKAVKN  120
NKFPRSYYRC THQGCNVKKQ VQRLSKDESI VVTTYEGVHT HPIEKPTDNF EHILNQMQIY  180
AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2794163776Probable WRKY transcription factor 4
2lex_A1e-2794163776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7284500.0JQ728450.1 Vitis amurensis WRKY45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274387.11e-136PREDICTED: probable WRKY transcription factor 75
TrEMBLD7SVN01e-135D7SVN0_VITVI; Uncharacterized protein
TrEMBLI3RQB51e-135I3RQB5_9ROSI; WRKY45
STRINGVIT_14s0068g01770.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-57WRKY DNA-binding protein 75