PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032983001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 22576.7 Da PI: 11.0233 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 58 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a++aa+++++g GSVIVT01032983001 58 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDAAALNFKG 107 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 57 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.974 | 58 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.54E-19 | 58 | 116 | No hit | No description |
SuperFamily | SSF54171 | 3.92E-22 | 58 | 116 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-37 | 58 | 121 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-14 | 58 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-12 | 59 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-12 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MISAFADHQD IGSWDNRLAH GYHGQGSLLA ASVSSMRQHG LSQPPQDRGR EGSARKRHYR 60 GVRQRPWGKW AAEIRDPKKA ARVWLGTFDT AEAAAAAYDA AALNFKGTKA KLNFPERSSH 120 IVKETFPAFH VVLIWIQEFM SLLSFRDMTF KASPCRKSKY QSFSFHFRSL TWRWLNFIVM 180 LQTQQVLTNR FAEQTW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-24 | 54 | 117 | 1 | 65 | ATERF1 |
3gcc_A | 3e-24 | 54 | 117 | 1 | 65 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM455523 | 1e-131 | AM455523.2 Vitis vinifera contig VV78X051777.28, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275870.2 | 2e-81 | PREDICTED: ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A438JDF5 | 1e-79 | A0A438JDF5_VITVI; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | F6H426 | 1e-79 | F6H426_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0068g01040.t01 | 2e-80 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 5e-30 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032983001 |