PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032961001
Common NameVITISV_025283
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 216aa    MW: 23717.8 Da    PI: 4.8515
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032961001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-192270355
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  GSVIVT01032961001 22 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 70
                       56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.70E-312177No hitNo description
SMARTSM003802.3E-342184IPR001471AP2/ERF domain
PROSITE profilePS5103220.7192178IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-212279IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-292278IPR001471AP2/ERF domain
PRINTSPR003672.3E-82233IPR001471AP2/ERF domain
PfamPF008474.0E-122470IPR001471AP2/ERF domain
PRINTSPR003672.3E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNPSTSKSKK KQTQQQETSG RFLGVRRRPW GRYAAEIRDP STKERHWLGT FDTAEEAALA  60
YDRAARSMRG SRARTNFVYS DMPPGSSVTS IISPDESLPD FSSHFPLVDN MNGTTTTTNN  120
QFYNANDLPP FPSQVSDQLP SSGFEMEQAT WGDSTSLAGF SEQRTSPNEF DSAGGGSYLG  180
FDSTQYVHSP LFGRMPPVSD TPPDGFDLGS SSYFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-192277359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-1920771371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in germinating seeds. Present in young shoots, at low levels, especially in leaf primordia and developing leaf blades. Also detected in vascular tissue, mostly in xylem, of young leaves, petioles and hypocotyls. {ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4363850.0AM436385.2 Vitis vinifera contig VV78X236551.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276221.11e-126PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9M6444e-60LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A438EB091e-129A0A438EB09_VITVI; Ethylene-responsive transcription factor LEP
STRINGVIT_14s0068g00860.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-34ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]