PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032817001
Common NameLOC100260296, VIT_13s0067g00920
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-X1
Protein Properties Length: 598aa    MW: 67117.8 Da    PI: 8.5063
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032817001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.32.2e-051635120
           zf-NF-X1  1 CGkHkCqklCHeGpCppCpq 20
                       CGkH C+k CH G+C++Cp+
  GSVIVT01032817001 16 CGKHACSKGCHSGECGQCPL 35
                       ******************95 PP
2zf-NF-X118.64e-06123142120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG+H C++ C+ G+CppC++
  GSVIVT01032817001 123 CGRHACKRRCCDGDCPPCSE 142
                        ******************85 PP
3zf-NF-X116.51.9e-05144168119
           zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                        CG      +HkC ++CH+GpC pCp
  GSVIVT01032817001 144 CGkrlrckNHKCPSPCHRGPCAPCP 168
                        777777779***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060083.29E-7949No hitNo description
SMARTSM004380.00611635IPR000967Zinc finger, NF-X1-type
PfamPF014220.0141634IPR000967Zinc finger, NF-X1-type
CDDcd060081.15E-760109No hitNo description
SMARTSM004380.137090IPR000967Zinc finger, NF-X1-type
PfamPF014220.0157089IPR000967Zinc finger, NF-X1-type
CDDcd060082.78E-8113161No hitNo description
SMARTSM004380.0092123142IPR000967Zinc finger, NF-X1-type
PfamPF014225.5E-4123141IPR000967Zinc finger, NF-X1-type
CDDcd060084.05E-11140188No hitNo description
PfamPF014220.0021144168IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0069150169IPR000967Zinc finger, NF-X1-type
SMARTSM0043859213228IPR000967Zinc finger, NF-X1-type
PfamPF014225.7217227IPR000967Zinc finger, NF-X1-type
SMARTSM00438100236281IPR000967Zinc finger, NF-X1-type
PfamPF0142250236245IPR000967Zinc finger, NF-X1-type
SMARTSM0043834318351IPR000967Zinc finger, NF-X1-type
PfamPF014220.097318328IPR000967Zinc finger, NF-X1-type
SMARTSM004380.2361379IPR000967Zinc finger, NF-X1-type
PfamPF014221.1363378IPR000967Zinc finger, NF-X1-type
SMARTSM004384.8424445IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MMALALLVPC GRVLGCGKHA CSKGCHSGEC GQCPLQGRRT CPCGKRVYEG MACDVSVPLC  60
GATCDKMLSC GFHSCPERCH RGQCIETCRT VVIKGCRCGS LKKEVPCYQD LACERKCQKV  120
RDCGRHACKR RCCDGDCPPC SEICGKRLRC KNHKCPSPCH RGPCAPCPVM VTISCSCGET  180
HFEVPCGTET EQKPPKCSKL CHITPLCKHG SDCKPHRCHY GACPPCRLLC EEEFPCGHKC  240
KLRCHGPKPP PNPEFTLKPK KRKSNHQAEG TPGSPCPPCS ELLWRSCVGQ HIGTERMMVC  300
SDRKKFSCEN LCGNLLPCGN HYCTKTCHAL MSQFLTSVQN QRGESCEDCH LPCEKERRPK  360
CPHPCPSPCH PGECAPCKVL IKRSCHCGSM VHVFECLYFN SLSEKEQMTI RSCGGPCHRK  420
LPNCTHLCPE TCHPGQCPSP DKCSKKVTVR CGCQTLKKEW LCHDVQAAYL NVSCDPKDVS  480
KNQFGLGLLP CNSECKSKVK VVDSELQLRK PKVVERKEPH VEKHVPKRRK RRERVQEVQQ  540
ISRLQKIIST TWRLLLYFTF LMVLIAVTYY GYKGLLWLSD WMNEVEEKRE RRRYPQI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1525531PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.54990.0bud| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4780901e-162AM478090.2 Vitis vinifera contig VV78X122122.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271239.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLF6HCC40.0F6HCC4_VITVI; Uncharacterized protein
STRINGVIT_13s0067g00920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors