PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032807001
Common NameVIT_13s0067g01070
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 472aa    MW: 52361.8 Da    PI: 8.1745
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032807001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.5e-08328348526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ +++ G C+ Gd+C +aHg
  GSVIVT01032807001 328 PCPEYRK-GSCQKGDSCEYAHG 348
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.6E-15133252IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-15150250IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0044173203IPR002110Ankyrin repeat
PROSITE profilePS5029715.326173248IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.71173197IPR002110Ankyrin repeat
PfamPF136372.0E-9174226No hitNo description
CDDcd002045.04E-13175248No hitNo description
PROSITE profilePS5008810.579208243IPR002110Ankyrin repeat
SMARTSM002480.0057208240IPR002110Ankyrin repeat
PROSITE profilePS5010313.45323350IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5323349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4328350IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5328348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4356386IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.263358382IPR000571Zinc finger, CCCH-type
SMARTSM0035615358381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MTRFQPSLPG HSWSTPFAIQ TQDPRAPRPL RHLNPPRRSS TLGIGREGKV SPSSHLLRSP  60
HRLWRRNINS CELFSLEFNL SFLHFCYLCQ LLLFEGYMCS GSKSKLCPFN MVMEGKSPNQ  120
ADGISSKCSV LLELSASDDL KSFRCEVEEK GMEVDKPGFW YGRRLGSKKM GFEERTPLSI  180
AAMFGSTEVL KYIIETGKVD VNRACGSDQV TALHCAAAGG SVSSLEVVKL LLDASADANC  240
VDCNGNKPPS TAPQLSKEGS EKKEYPIDIS LPDINNGIYG TDEFRMYTFK VKPCSRAYSH  300
DWTECPFVHP GENARRRDPK KFPYSCVPCP EYRKGSCQKG DSCEYAHGVF ECWLHPAQYR  360
TRLCKDETGC SRKVCFFAHR PEELRPLYAS TGSAMPSPRS LSASAVDMAT LSPLTLGSSA  420
LLLPPTSSGM WQNKVNFTPP SLQLPGSRLK SALSARDLEL ELELLELERI Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.55920.0bud| cell culture| flower| fruit| inflorescence| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4624310.0AM462431.2 Vitis vinifera contig VV78X158466.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019079979.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1
SwissprotQ9XEE61e-167C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLF6HCC20.0F6HCC2_VITVI; Uncharacterized protein
STRINGVIT_13s0067g01070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-158C3H family protein