PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032785001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 660aa MW: 71088.9 Da PI: 8.9747 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 6.1e-18 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g GSVIVT01032785001 60 KYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAIILYG 109 7*****999.**********954...5*********************988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-29 | 60 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-38 | 60 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.247 | 60 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-19 | 60 | 117 | No hit | No description |
Pfam | PF00847 | 1.0E-11 | 60 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-20 | 60 | 118 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.3E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
TIGRFAMs | TIGR00820 | 5.6E-83 | 210 | 529 | IPR004698 | Zinc/iron permease, fungal/plant |
Pfam | PF02535 | 6.5E-45 | 219 | 526 | IPR003689 | Zinc/iron permease |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071577 | Biological Process | zinc II ion transmembrane transport | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005385 | Molecular Function | zinc ion transmembrane transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MDCEDQDTKP ITTTTTSNET NSSNSSSATA GATSCGGDNG SNGNSRKCKG KGGPDNSKFK 60 YRGVRQRSWG KWVAEIREPR KRTRKWLGTF ATAEDAARAY DRAAIILYGS RAQLNLQPSV 120 SSASSSSRGS SSSSSGTQTL RPLLPRPSGF GLTFSSPSAT PHTAGGYVPY GFSHGMDSSV 180 LCGNVVQSQQ QLVQQQHQLL YPPTTAPSWS CQDSEASAEL KLIVMAVMLG TSIVSISSPL 240 IFSHFIHWKP IHSKLLLAIK CLAAGVILSI SLVHVLPRSF DSLSDCQVVS LRPWKDLPFS 300 GIVPIIGAVT ALLVDIMQSC YGNDKSSHYA PVKTHEDSSS DGKKTVTTQF EMGIMGWHDR 360 QAEEMAKLKQ RLVAQVLEIG VVFYPVIIGL MTGVSHNLCT VKALVAALVL HHFFEGIELG 420 GCMAQAGLNF GTTAYMCIVF SVTAPIGMVL GMILYTATGY EPRSANALIM EGISGSLASG 480 ILLYMAFVKF TAVEFFYSKV MMGSRPWMKK LCFFLFVVGC ASMAFLIIWD SMPSVKSLAS 540 APLDCGASTG DCRSGMSAYM ITGGKSLQKF HNTVCPDCKP IRTVDDNSGA EVRRLCSSCR 600 SVPSPAGTWA IRTSRRASST SPATPRCRIL TLYFSFSMRP PHDSWLMTYS HCSLFLVGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-19 | 61 | 123 | 6 | 69 | ATERF1 |
3gcc_A | 4e-19 | 61 | 123 | 6 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM432674 | 0.0 | AM432674.2 Vitis vinifera contig VV78X065828.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272849.2 | 0.0 | PREDICTED: zinc transporter 6, chloroplastic | ||||
TrEMBL | F6HCB2 | 0.0 | F6HCB2_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0067g01370.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 2e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032785001 |