PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032785001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 660aa    MW: 71088.9 Da    PI: 8.9747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032785001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-1860109255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  GSVIVT01032785001  60 KYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAIILYG 109
                        7*****999.**********954...5*********************988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-2960117IPR001471AP2/ERF domain
SMARTSM003804.7E-3860123IPR001471AP2/ERF domain
PROSITE profilePS5103222.24760117IPR001471AP2/ERF domain
CDDcd000181.05E-1960117No hitNo description
PfamPF008471.0E-1160105IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2060118IPR016177DNA-binding domain
PRINTSPR003678.3E-106172IPR001471AP2/ERF domain
PRINTSPR003678.3E-108399IPR001471AP2/ERF domain
TIGRFAMsTIGR008205.6E-83210529IPR004698Zinc/iron permease, fungal/plant
PfamPF025356.5E-45219526IPR003689Zinc/iron permease
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071577Biological Processzinc II ion transmembrane transport
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005385Molecular Functionzinc ion transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MDCEDQDTKP ITTTTTSNET NSSNSSSATA GATSCGGDNG SNGNSRKCKG KGGPDNSKFK  60
YRGVRQRSWG KWVAEIREPR KRTRKWLGTF ATAEDAARAY DRAAIILYGS RAQLNLQPSV  120
SSASSSSRGS SSSSSGTQTL RPLLPRPSGF GLTFSSPSAT PHTAGGYVPY GFSHGMDSSV  180
LCGNVVQSQQ QLVQQQHQLL YPPTTAPSWS CQDSEASAEL KLIVMAVMLG TSIVSISSPL  240
IFSHFIHWKP IHSKLLLAIK CLAAGVILSI SLVHVLPRSF DSLSDCQVVS LRPWKDLPFS  300
GIVPIIGAVT ALLVDIMQSC YGNDKSSHYA PVKTHEDSSS DGKKTVTTQF EMGIMGWHDR  360
QAEEMAKLKQ RLVAQVLEIG VVFYPVIIGL MTGVSHNLCT VKALVAALVL HHFFEGIELG  420
GCMAQAGLNF GTTAYMCIVF SVTAPIGMVL GMILYTATGY EPRSANALIM EGISGSLASG  480
ILLYMAFVKF TAVEFFYSKV MMGSRPWMKK LCFFLFVVGC ASMAFLIIWD SMPSVKSLAS  540
APLDCGASTG DCRSGMSAYM ITGGKSLQKF HNTVCPDCKP IRTVDDNSGA EVRRLCSSCR  600
SVPSPAGTWA IRTSRRASST SPATPRCRIL TLYFSFSMRP PHDSWLMTYS HCSLFLVGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1961123669ATERF1
3gcc_A4e-1961123669ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4326740.0AM432674.2 Vitis vinifera contig VV78X065828.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272849.20.0PREDICTED: zinc transporter 6, chloroplastic
TrEMBLF6HCB20.0F6HCB2_VITVI; Uncharacterized protein
STRINGVIT_13s0067g01370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-32ERF family protein