PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032779001 | ||||||||
Common Name | LOC100243201, VIT_13s0067g01450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18961.7 Da PI: 8.3781 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.9 | 2.6e-41 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l++ GSVIVT01032779001 11 SCAACKFLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQH 102 6******************************************************************************************* PP DUF260 93 elallkee 100 +la ++++ GSVIVT01032779001 103 DLAIARAR 110 **999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.709 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.3E-41 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKGHEPRSSS SCAACKFLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILVEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIARAR LARYTMPASS 120 TSSIFHGSLA MAGFQDFPGC SGIFDGFSHL NSMELNQPVA INDFSQPPFQ L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-47 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-47 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.15374 | 0.0 | flower| fruit| inflorescence |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM429121 | 0.0 | AM429121.2 Vitis vinifera contig VV78X041468.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272821.1 | 1e-126 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 4e-69 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | D7T4L7 | 1e-124 | D7T4L7_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0067g01450.t01 | 1e-125 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-71 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032779001 |
Entrez Gene | 100243201 |
Publications ? help Back to Top | |||
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