PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032714001 | ||||||||
Common Name | LOC100251929, VIT_13s0067g02380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 24402.9 Da PI: 8.9438 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.2 | 2.5e-42 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+a GSVIVT01032714001 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQA 133 7******************************************************************************************* PP DUF260 93 elallkee 100 el+++++e GSVIVT01032714001 134 ELNAVRAE 141 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.813 | 41 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-42 | 42 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSRERERFDE IGKKIKRETD AFTQMGRRHM LGPPGTLNSI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISALQQQVQS LQAELNAVRA EILKYKYREA NIIPPSHIAL LSSGAVSVAA PPPAQPPAQA 180 PPPPPPPPPI PLPLPPNSSS SMYTQPSSSA DYSTISSENV SYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-46 | 34 | 154 | 3 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-46 | 34 | 154 | 3 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.10549 | 0.0 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ386881 | 0.0 | FQ386881.1 Vitis vinifera clone SS0AEB28YH02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279029.1 | 1e-163 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 4e-88 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | D7T4G0 | 1e-161 | D7T4G0_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0067g02380.t01 | 1e-162 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-87 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032714001 |
Entrez Gene | 100251929 |
Publications ? help Back to Top | |||
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