PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032662001 | ||||||||
Common Name | LOC100263918, VIT_13s0067g03130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 309aa MW: 34255.2 Da PI: 7.2192 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.2 | 3.3e-28 | 175 | 235 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs++prsYYrCt++ +Cp+kk+v+r ++dp +++itY ++H+++ GSVIVT01032662001 175 DDNFTWRKYGQKEILGSKYPRSYYRCTHQklyNCPAKKQVQRLEHDPFMFDITYIDDHTCH 235 8****************************999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-27 | 170 | 236 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-25 | 172 | 235 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-37 | 174 | 236 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 175 | 235 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.254 | 175 | 232 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MEETLSHIVR GCKLARELES NIPNLAKQPR MLAKSCDEIM KIFGTAKERL NAQDDHSAYP 60 YMFAQASGME TSGEMQEWLK TSYLQALQAQ YGLTESKVGG IEPVTLSGHP GFELGGRDRE 120 GSARSTGSGG EFQAMEGSDS GNSNSQRLRR RKDDIRKRKE TVAAPRIGNT DIPPDDNFTW 180 RKYGQKEILG SKYPRSYYRC THQKLYNCPA KKQVQRLEHD PFMFDITYID DHTCHKSATA 240 PSGSSSSMVG TGGSTAGPSM VRFGREAEYP VVDLADTMFN SGSSSSNSMD FLFTHTEEKW 300 EPAGDKKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-18 | 157 | 232 | 4 | 74 | Disease resistance protein RRS1 |
5w3x_D | 6e-18 | 157 | 232 | 4 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM454875 | 0.0 | AM454875.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X168903.5, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275373.1 | 0.0 | PREDICTED: WRKY transcription factor 55 | ||||
TrEMBL | A0A438E3U8 | 0.0 | A0A438E3U8_VITVI; WRKY transcription factor 55 | ||||
TrEMBL | F6HC34 | 0.0 | F6HC34_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0067g03130.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 9e-55 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032662001 |
Entrez Gene | 100263918 |