PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032661001
Common NameLOC100258754, VIT_13s0067g03140
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 289aa    MW: 32693.3 Da    PI: 5.9279
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032661001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.76.4e-25111171259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqKe+ +++fprsYYrCt +   +C+++k+v+r +e+p + ++tY g+H+++
  GSVIVT01032661001 111 EDGHAWRKYGQKEILNAKFPRSYYRCTRKheqSCRATKQVQRMKENPIMYHTTYIGHHTCR 171
                        8**************************988889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-23102171IPR003657WRKY domain
PROSITE profilePS5081119.325105168IPR003657WRKY domain
SuperFamilySSF1182901.31E-23107171IPR003657WRKY domain
SMARTSM007742.2E-35110172IPR003657WRKY domain
PfamPF031063.3E-24111171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGTSPPERLS TDRKRVVGEL VHGRDLANQL QILLREPFSD QGSVSAEDLV VKILRSFTEA  60
LSVLRCYDQS GDAGGESPAE SGNYKVLKNR RGCYKRRKNS ETWTAVSSTI EDGHAWRKYG  120
QKEILNAKFP RSYYRCTRKH EQSCRATKQV QRMKENPIMY HTTYIGHHTC RDILKAPQFI  180
GSSYPGYDSN NMVGSESKIP EEVQEMKPEL IKEETVVSDL TSDNVSSMDS INLWSDQNVD  240
STMYSRNATT TTTATTASHN TDMDFVLGCL DFEGDDQFQF DESPFQFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22104171269OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3917550.0FQ391755.1 Vitis vinifera clone SS0AFA9YL03.
GenBankFQ3960170.0FQ396017.1 Vitis vinifera clone SS0AFA12YI14.
GenBankKT0364620.0KT036462.1 Vitis vinifera cultivar Vidal Blanc WRKY54 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275401.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLF6HC330.0F6HC33_VITVI; WRKY54
STRINGVIT_13s0067g03140.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-46WRKY DNA-binding protein 70