PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032467001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27346 Da PI: 9.6754 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.3e-19 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l d+vk++G+g+W++Ia++ g++R++k+c++rw +yl GSVIVT01032467001 9 KGLWTLEEDKILMDYVKEHGKGQWNRIAKKTGLRRCGKSCRLRWINYL 56 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 59.1 | 1e-18 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eE++l+++++k+lG++ W++Ia +++ gRt++q+k++w+++l GSVIVT01032467001 62 RGDFTAEEEDLIIRLHKLLGNR-WSLIAGRVP-GRTDNQVKNYWNTHL 107 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.033 | 1 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.19E-31 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-17 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-11 | 12 | 56 | No hit | No description |
PROSITE profile | PS51294 | 27.958 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-18 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-17 | 62 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-27 | 64 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.86E-12 | 65 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEEVNQYKKG LWTLEEDKIL MDYVKEHGKG QWNRIAKKTG LRRCGKSCRL RWINYLSPNV 60 KRGDFTAEEE DLIIRLHKLL GNRWSLIAGR VPGRTDNQVK NYWNTHLSKK LGIKKKNNGA 120 NVSSTLTNTR EMQKGSEPLM NSSSSPSCGS SRGAAEAKAN EGTLQQSLEA PDWHDQLVIG 180 EGYLDSFWAI NDDLELTTDS IMEFLNGHQR FKLLYNCRIW HSTHSNNYMR LVFLSPNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 9 | 111 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.15933 | 0.0 | fruit| inflorescence |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM467689 | 0.0 | AM467689.2 Vitis vinifera contig VV78X207576.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660913.1 | 1e-152 | PREDICTED: transcription factor WER | ||||
Swissprot | Q9SEI0 | 2e-73 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | F6HUZ4 | 1e-150 | F6HUZ4_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0066g01220.t01 | 1e-151 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 3e-75 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032467001 |