PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032362001
Common NameLOC100255968, VIT_14s0066g00150
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 368aa    MW: 40974.3 Da    PI: 7.7657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032362001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.6e-16196230135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++C+tt+T  WR gp+g+k+LC aCG++  k+++
  GSVIVT01032362001 196 CAHCHTTETLRWRTGPEGHKSLCDACGIRLEKQRE 230
                        *****************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-10190241IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.422190223IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-10190230No hitNo description
CDDcd002025.36E-8195230No hitNo description
Gene3DG3DSA:3.30.50.101.2E-11195229IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.0E-13196230IPR000679Zinc finger, GATA-type
PROSITE profilePS5152516.722287367IPR027353NET domain
PfamPF170353.3E-20296357IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSEGSKCVVA SAEHNKVGPN YFGFYVREVA ELLSQDKDFL PCSSQASELS ARTGGQVRDG  60
DKIKHGCDGK EAKSSSSSGS LFSNGIGAGI SDFKNERLKA LLRQSVTSLT QEVDEMLDPV  120
LAIRQIQAHL RYKKHQSRNS NGESDGCAGQ FPCKKRKMSS PNASHISCGS SREGSAFECV  180
DGASSEKRKS NIVKSCAHCH TTETLRWRTG PEGHKSLCDA CGIRLEKQRE PLFCSNTGAE  240
KENGEVNDDL KILLENDCSL VEERVKKYSD ELSGTLGLME QQLEQLLDTV MCQCRPMTRR  300
EKQQLQKMIQ KLPPKNLERA VEIIQRGKLP EIHSDEIHVN LEKEDNATLW RLYYYVEAVE  360
KARKLSR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.107730.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4232790.0AM423279.2 Vitis vinifera contig VV78X278779.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660834.10.0PREDICTED: GATA transcription factor 7
RefseqXP_010660835.10.0PREDICTED: GATA transcription factor 7
TrEMBLD7TWF40.0D7TWF4_VITVI; Uncharacterized protein
STRINGVIT_14s0066g00150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP940022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-10GATA transcription factor 15