PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032239001
Common NameLOC100246757
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 327aa    MW: 36698 Da    PI: 9.7085
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032239001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.6e-4151128178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC+ dl++ak+yhrrh++Ce hsk+p+v+v+gle+rfCqqCsrfhel+efD++krsCrrrL++hn+rrr++++
  GSVIVT01032239001  51 RCQVEGCNLDLKSAKDYHRRHRICENHSKSPKVIVAGLERRFCQQCSRFHELTEFDDKKRSCRRRLNDHNARRRRPHP 128
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.8E-3645113IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.79549126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.16E-3950131IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3252125IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MIGLKLGKRT YFEDVCAAST AKTTTSSVNP ASSVSATKRF RTSYQSSQTP RCQVEGCNLD  60
LKSAKDYHRR HRICENHSKS PKVIVAGLER RFCQQCSRFH ELTEFDDKKR SCRRRLNDHN  120
ARRRRPHPES IQFSSGRLPS SLYDGRQQIN LACNRLPIPV ATPMWQNPCS FKDTQTGGSL  180
IRPVKAVGID KQLHLPTDEM PDAISMLHGN SERMLSFDGS TPRVLNQGLE ASAIASNSNV  240
APDFRRALSL LSTNSWGLND PGPTSLDQLM HSFNYLKHLM SLAVFIPIKL TENQVCFQCQ  300
KELQIKCSPC DAFEKAIMGI RMPFVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-28521251184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107124KKRSCRRRLNDHNARRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.81670.0bud| fruit| inflorescence| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0186010.0HM018601.1 Vitis vinifera cultivar Xiahei promoter-binding protein SPL10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268193.10.0promoter-binding protein SPL10
SwissprotQ5Z8185e-84SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBLD6QZ300.0D6QZ30_VITVI; Promoter-binding protein SPL10
STRINGVIT_11s0065g00170.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-43squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]