PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032101001
Common NameVIT_13s0064g00860
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YA
Protein Properties Length: 406aa    MW: 44737 Da    PI: 9.6997
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032101001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.44.3e-32234290158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq+Rak+e ekk  +k rkpylheSRh+hA+rR+Rg+gGrF
  GSVIVT01032101001 234 EEPVYVNAKQYHGILRRRQSRAKAELEKKA-IKVRKPYLHESRHQHAMRRARGCGGRF 290
                        69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-36232293IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.207233293IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-27235290IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-24236258IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860238258IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-24267290IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVWLFLAKSE VNFVAETPWI ATNGHDFLPN SYLLGFIPLL SSHIRFGARG FLFSWWKRIM  60
PTKPKIEDRR IEPGGKSNPS STVYSQPWWH GVGNNAISPA ALGGSPSKST SVEHLNSHIT  120
SNGFQLQANG RLDDGTTFNK GTQPTVALQS DGRNGQEHQH LNPTASSTLP IMSEHLEPNS  180
QMELVGHSIV LTSYPYQDPH NVGIMTSYGP QAMVHPHLFG MHQPRMPLPL EMEEEPVYVN  240
AKQYHGILRR RQSRAKAELE KKAIKVRKPY LHESRHQHAM RRARGCGGRF LNTKKLDNND  300
ANTTAEKGSV SGAALSTQSA SSSGSEHLPT NSSRNLDSSS VQQEEKGRTI QDMLEAHTYS  360
NGNRNGHGLS SAYHSSNGSE GGDCFGQPRE NMQLNTAPHR ALPIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-20234298266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.129130.0cell culture| flower| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3808600.0FQ380860.1 Vitis vinifera clone SS0ACG24YE14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278849.10.0PREDICTED: nuclear transcription factor Y subunit A-1
TrEMBLD7T3110.0D7T311_VITVI; Uncharacterized protein
STRINGVIT_13s0064g00860.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.48e-41nuclear factor Y, subunit A1