PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01031982001 | ||||||||
Common Name | LOC100853961, VIT_03s0063g02670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 10770.3 Da PI: 9.5272 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 4.9e-09 | 10 | 54 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g WT +l+ +a +++ ++ +W +a+ +g g++++++k ++ GSVIVT01031982001 10 GLWTSKQNKLFEKALALYDKDtpdRWQNVAKAVG-GKSAEEVKRHY 54 56********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.493 | 4 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-7 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.4E-12 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.2E-7 | 10 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-5 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-6 | 12 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 97 aa Download sequence Send to blast |
MASGSRMGSG LWTSKQNKLF EKALALYDKD TPDRWQNVAK AVGGKSAEEV KRHYEILIED 60 LKHIESGHVP IPNYKSTGSN SIGDQEQRLL KCIKLQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-36 | 4 | 87 | 2 | 86 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.8454 | 1e-162 | pedicel |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM451891 | 1e-143 | AM451891.2 Vitis vinifera contig VV78X106217.10, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003631666.1 | 1e-66 | PREDICTED: protein RADIALIS-like 3 isoform X1 | ||||
Swissprot | Q1A173 | 1e-40 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A438EL08 | 3e-65 | A0A438EL08_VITVI; Protein RADIALIS-like 6 | ||||
TrEMBL | D7TQ27 | 3e-65 | D7TQ27_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0063g02670.t01 | 5e-66 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-43 | RAD-like 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01031982001 |
Entrez Gene | 100853961 |