PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031747001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 273aa    MW: 31061.6 Da    PI: 8.642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031747001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20108157255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+W+AeIrdp+    r +r++lg+f+tae Aa+a+++a+  ++g
  GSVIVT01031747001 108 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFDTAEAAARAYDKAAIDFRG 157
                        59*******.**********82....48**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM008106.4E-253597IPR012850Alpha-amylase, C-terminal beta-sheet
PfamPF078215.6E-153692IPR012850Alpha-amylase, C-terminal beta-sheet
Gene3DG3DSA:2.60.40.11802.8E-223993IPR013780Glycosyl hydrolase, all-beta
SuperFamilySSF510111.4E-133993No hitNo description
CDDcd000182.71E-24107165No hitNo description
SuperFamilySSF541712.29E-22108166IPR016177DNA-binding domain
PfamPF008477.7E-14108157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32108165IPR001471AP2/ERF domain
PROSITE profilePS5103225.488108165IPR001471AP2/ERF domain
SMARTSM003804.3E-38108171IPR001471AP2/ERF domain
PRINTSPR003675.6E-12109120IPR001471AP2/ERF domain
PRINTSPR003675.6E-12131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004556Molecular Functionalpha-amylase activity
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MLFQFISTRF LFIFYDHFFE WGLKEEILKL IMIRTRNRIK PNSAVRILAS DLDLYVAVID  60
GKIIVKIGPG FDVGNLVPQS FKKIATSGKD YCCMGEKNNP DMKNPKKNYR GVRQRPWGKW  120
AAEIRDPRRA ARVWLGTFDT AEAAARAYDK AAIDFRGPRA KLNFPFPDNT LLTQNTVETE  180
QPLQENQGNS EFLAQTGDIN ENGFWEMIGN DQWMTMVGFT GVYVTDKEST ILSIFSLQLN  240
KNNGISLPFI RALLFFLSFG QNDTTDITIS EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1amy_A2e-2413933203991,4-ALPHA-D-GLUCAN GLUCANOHYDROLASE
1ava_A2e-241393320399BARLEY ALPHA-AMYLASE 2(CV MENUET)
1ava_B2e-241393320399BARLEY ALPHA-AMYLASE 2(CV MENUET)
1bg9_A2e-2413933203991,4-ALPHA-D-GLUCAN GLUCANOHYDROLASE
2gcc_A2e-24107170468ATERF1
3gcc_A2e-24107170468ATERF1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.235850.0flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4604040.0AM460404.2 Vitis vinifera contig VV78X201714.7, whole genome shotgun sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-23redox responsive transcription factor 1